Predicted to enable GTPase activity. Involved in phagosome acidification and phagosome-lysosome fusion. Located in Golgi apparatus and phagocytic vesicle. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for RAB20. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RAB20 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RAB20, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr13:110,306,322–110,309,108 | 254.5 kb | Distal (>10kb) Multiome | 398 | |
| chr13:110,485,584–110,487,244 | 75.1 kb | Distal (>10kb) Multiome | 272 | |
| chr13:110,540,846–110,542,010 | 20.4 kb | Distal (>10kb) Multiome | 268 | |
| chr13:110,561,007–110,562,237 | 17 bp | At TSS Multiome | 710 | |
| chr13:110,615,145–110,616,475 | 53.9 kb | Distal (>10kb) Multiome | 792 | |
| chr13:110,644,706–110,645,508 | 83.3 kb | Distal (>10kb) Multiome | 290 | |
| chr13:110,705,702–110,706,922 | 144.5 kb | Distal (>10kb) Multiome | 770 | |
| chr13:110,712,027–110,716,477 | 153.9 kb | Distal (>10kb) Multiome | 1162 | |
| chr13:110,812,187–110,813,068 | 250.9 kb | Distal (>10kb) Multiome | 129 |
Genomic view of the RAB20 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.