NISCH
nischarin | I-1, IRAS, KIAA0975

This gene encodes a nonadrenergic imidazoline-1 receptor protein that localizes to the cytosol and anchors to the inner layer of the plasma membrane. The orthologous mouse protein has been shown to influence cytoskeletal organization and cell migration by binding to alpha-5-beta-1 integrin. In humans, this protein has been shown to bind to the adapter insulin receptor substrate 4 (IRS4) to mediate translocation of alpha-5 integrin from the cell membrane to endosomes. Expression of this protein was reduced in human breast cancers while its overexpression reduced tumor growth and metastasis; possibly by limiting the expression of alpha-5 integrin. In human cardiac tissue, this gene was found to affect cell growth and death while in neural tissue it affected neuronal growth and differentiation. Alternative splicing results in multiple transcript variants encoding differerent isoforms. Some isoforms lack the expected C-terminal domains of a functional imidazoline receptor. [provided by RefSeq, Jan 2013]

Member of: DE-10 DE-10.8 Developmental clusters: GC6
Biological processes 14 terms
Expression (TPM)
NISCH — as a Regulated Gene

TFs regulating NISCH 0 TFs

Transcription factors with Perturb-seq knockdown data for NISCH. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = NISCH upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to NISCH

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of NISCH, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr3:52,197,554–52,198,856 257.5 kb Distal (>10kb) Multiome 731
chr3:52,238,767–52,239,716 216.4 kb Distal (>10kb) Multiome 763
chr3:52,245,446–52,246,450 209.7 kb Distal (>10kb) Multiome 553
chr3:52,277,664–52,279,184 176.9 kb Distal (>10kb) Multiome 844
chr3:52,287,499–52,288,336 167.7 kb Distal (>10kb) Multiome 778
chr3:52,409,430–52,411,187 45.3 kb Distal (>10kb) Multiome 813
chr3:52,444,941–52,445,411 10.5 kb Distal (>10kb) Multiome 426
chr3:52,446,925–52,447,311 8.3 kb Proximal (<10kb) 325
chr3:52,455,213–52,455,878 101 bp At TSS Multiome 630
chr3:52,456,226–52,456,840 610 bp At TSS 193
chr3:52,518,607–52,519,389 63.4 kb Distal (>10kb) Multiome 176
chr3:52,533,486–52,535,316 78.3 kb Distal (>10kb) Multiome 648
chr3:52,536,232–52,537,450 80.9 kb Distal (>10kb) Multiome 901
chr3:52,685,427–52,686,463 230.2 kb Distal (>10kb) Multiome 933
chr3:52,705,495–52,706,415 250.4 kb Distal (>10kb) Multiome 862
chr3:52,714,354–52,715,301 259.1 kb Distal (>10kb) Multiome 224

Genome Browser

Genomic view of the NISCH locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr3:52,187,554 – 52,725,301
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq