Transcription factors with Perturb-seq knockdown data for LINC01572. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC01572 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC01572, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:72,370,949–72,371,904 | 293.4 kb | Distal (>10kb) Multiome | 273 | |
| chr16:72,380,053–72,380,764 | 284.5 kb | Distal (>10kb) Multiome | 57 | |
| chr16:72,664,439–72,665,423 | 72 bp | At TSS Multiome | 691 |
Genomic view of the LINC01572 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.