LAMB1
laminin subunit beta 1 | CLM

Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the beta chain isoform laminin, beta 1. The beta 1 chain has 7 structurally distinct domains which it shares with other beta chain isomers. The C-terminal helical region containing domains I and II are separated by domain alpha, domains III and V contain several EGF-like repeats, and domains IV and VI have a globular conformation. Laminin, beta 1 is expressed in most tissues that produce basement membranes, and is one of the 3 chains constituting laminin 1, the first laminin isolated from Engelbreth-Holm-Swarm (EHS) tumor. A sequence in the beta 1 chain that is involved in cell attachment, chemotaxis, and binding to the laminin receptor was identified and shown to have the capacity to inhibit metastasis. [provided by RefSeq, Aug 2011]

Member of: DE-4 DE-4.24 Developmental clusters: GC2
Biological processes 66 terms
basement membrane (GO:0005604)basement membrane (GO:0005604)basement membrane (GO:0005604)basement membrane (GO:0005604)basement membrane (GO:0005604)cell adhesion (GO:0007155)cytoplasm (GO:0005737)endodermal cell differentiation (GO:0035987)endoplasmic reticulum lumen (GO:0005788)enzyme binding (GO:0019899)extracellular exosome (GO:0070062)extracellular matrix (GO:0031012)extracellular matrix (GO:0031012)extracellular matrix (GO:0031012)extracellular matrix (GO:0031012)extracellular matrix structural constituent (GO:0005201)extracellular matrix structural constituent (GO:0005201)extracellular matrix structural constituent (GO:0005201)extracellular matrix structural constituent (GO:0005201)extracellular region (GO:0005576)extracellular region (GO:0005576)extracellular region (GO:0005576)extracellular region (GO:0005576)glycosphingolipid binding (GO:0043208)integrin binding (GO:0005178)laminin trimer (GO:0043256)laminin-111 trimer (GO:0005606)laminin-111 trimer (GO:0005606)laminin-111 trimer (GO:0005606)laminin-111 trimer (GO:0005606)laminin-111 trimer (GO:0005606)laminin-211 trimer (GO:0005607)laminin-211 trimer (GO:0005607)laminin-213 trimer (GO:0043261)laminin-311 trimer (GO:0005611)laminin-411 trimer (GO:0043257)laminin-411 trimer (GO:0043257)laminin-511 trimer (GO:0043259)laminin-511 trimer (GO:0043259)laminin-511 trimer (GO:0043259)negative regulation of cell adhesion (GO:0007162)neuron projection development (GO:0031175)neuron projection development (GO:0031175)neuronal-glial interaction involved in cerebral cortex radial glia guided migration (GO:0021812)nucleus (GO:0005634)odontogenesis (GO:0042476)perinuclear region of cytoplasm (GO:0048471)perinuclear region of cytoplasm (GO:0048471)positive regulation of cell adhesion (GO:0045785)positive regulation of cell migration (GO:0030335)positive regulation of epithelial cell proliferation (GO:0050679)positive regulation of integrin-mediated signaling pathway (GO:2001046)positive regulation of muscle cell differentiation (GO:0051149)positive regulation of skeletal muscle acetylcholine-gated channel clustering (GO:1904395)positive regulation of skeletal muscle acetylcholine-gated channel clustering (GO:1904395)protein binding (GO:0005515)receptor ligand activity (GO:0048018)receptor ligand activity (GO:0048018)regulation of basement membrane organization (GO:0110011)regulation of cell adhesion (GO:0030155)regulation of cell migration (GO:0030334)regulation of embryonic development (GO:0045995)signal transduction (GO:0007165)structural molecule activity (GO:0005198)substrate adhesion-dependent cell spreading (GO:0034446)substrate adhesion-dependent cell spreading (GO:0034446)
Expression (TPM)
LAMB1 — as a Regulated Gene

TFs regulating LAMB1 0 TFs

Transcription factors with Perturb-seq knockdown data for LAMB1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LAMB1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to LAMB1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LAMB1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr7:107,660,462–107,662,091 341.6 kb Distal (>10kb) Multiome 578
chr7:107,742,953–107,744,685 259.3 kb Distal (>10kb) Multiome 1055
chr7:107,890,620–107,891,827 111.9 kb Distal (>10kb) Multiome 950
chr7:107,932,723–107,933,235 70.2 kb Distal (>10kb) Multiome 109
chr7:107,933,467–107,933,955 2.1 kb Proximal (<10kb) 147
chr7:107,935,388–107,935,647 4.0 kb Proximal (<10kb) 38
chr7:107,995,599–107,995,821 7.3 kb Proximal (<10kb) 295
chr7:108,001,297–108,001,784 1.6 kb Proximal (<10kb) Multiome 244
chr7:108,001,968–108,003,797 15 bp At TSS Multiome 685
chr7:108,004,164–108,004,798 1.0 kb Proximal (<10kb) 312
chr7:108,134,914–108,135,839 132.1 kb Distal (>10kb) Multiome HiCAR 247
chr7:108,235,127–108,236,196 232.4 kb Distal (>10kb) Multiome 417

Genome Browser

Genomic view of the LAMB1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr7:107,650,462 – 108,246,196
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq