Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the beta chain isoform laminin, beta 1. The beta 1 chain has 7 structurally distinct domains which it shares with other beta chain isomers. The C-terminal helical region containing domains I and II are separated by domain alpha, domains III and V contain several EGF-like repeats, and domains IV and VI have a globular conformation. Laminin, beta 1 is expressed in most tissues that produce basement membranes, and is one of the 3 chains constituting laminin 1, the first laminin isolated from Engelbreth-Holm-Swarm (EHS) tumor. A sequence in the beta 1 chain that is involved in cell attachment, chemotaxis, and binding to the laminin receptor was identified and shown to have the capacity to inhibit metastasis. [provided by RefSeq, Aug 2011]
Transcription factors with Perturb-seq knockdown data for LAMB1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LAMB1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LAMB1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:107,660,462–107,662,091 | 341.6 kb | Distal (>10kb) Multiome | 578 | |
| chr7:107,742,953–107,744,685 | 259.3 kb | Distal (>10kb) Multiome | 1055 | |
| chr7:107,890,620–107,891,827 | 111.9 kb | Distal (>10kb) Multiome | 950 | |
| chr7:107,932,723–107,933,235 | 70.2 kb | Distal (>10kb) Multiome | 109 | |
| chr7:107,933,467–107,933,955 | 2.1 kb | Proximal (<10kb) | 147 | |
| chr7:107,935,388–107,935,647 | 4.0 kb | Proximal (<10kb) | 38 | |
| chr7:107,995,599–107,995,821 | 7.3 kb | Proximal (<10kb) | 295 | |
| chr7:108,001,297–108,001,784 | 1.6 kb | Proximal (<10kb) Multiome | 244 | |
| chr7:108,001,968–108,003,797 | 15 bp | At TSS Multiome | 685 | |
| chr7:108,004,164–108,004,798 | 1.0 kb | Proximal (<10kb) | 312 | |
| chr7:108,134,914–108,135,839 | 132.1 kb | Distal (>10kb) Multiome HiCAR | 247 | |
| chr7:108,235,127–108,236,196 | 232.4 kb | Distal (>10kb) Multiome | 417 |
Genomic view of the LAMB1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.