HLA-B
major histocompatibility complex, class I, B | AS

HLA-B belongs to the HLA class I heavy chain paralogues. This class I molecule is a heterodimer consisting of a heavy chain and a light chain (beta-2 microglobulin). The heavy chain is anchored in the membrane. Class I molecules play a central role in the immune system by presenting peptides derived from the endoplasmic reticulum lumen. They are expressed in nearly all cells. The heavy chain is approximately 45 kDa and its gene contains 8 exons. Exon 1 encodes the leader peptide, exon 2 and 3 encode the alpha1 and alpha2 domains, which both bind the peptide, exon 4 encodes the alpha3 domain, exon 5 encodes the transmembrane region and exons 6 and 7 encode the cytoplasmic tail. Polymorphisms within exon 2 and exon 3 are responsible for the peptide binding specificity of each class one molecule. Typing for these polymorphisms is routinely done for bone marrow and kidney transplantation. Hundreds of HLA-B alleles have been described. [provided by RefSeq, Jul 2008]

Member of: DE-7 DE-7.1
Biological processes 56 terms
ER to Golgi transport vesicle membrane (GO:0012507)ER to Golgi transport vesicle membrane (GO:0012507)Golgi apparatus (GO:0005794)Golgi membrane (GO:0000139)Golgi membrane (GO:0000139)MHC class I protein complex (GO:0042612)TAP binding (GO:0046977)TAP binding (GO:0046977)antigen processing and presentation (GO:0019882)antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (GO:0002486)antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (GO:0002486)antigen processing and presentation of endogenous peptide antigen via MHC class Ib (GO:0002476)antigen processing and presentation of exogenous peptide antigen via MHC class Ib (GO:0002477)beta-2-microglobulin binding (GO:0030881)cell surface (GO:0009986)cell surface (GO:0009986)cell surface (GO:0009986)defense response (GO:0006952)detection of bacterium (GO:0016045)early endosome membrane (GO:0031901)early endosome membrane (GO:0031901)endoplasmic reticulum (GO:0005783)endoplasmic reticulum membrane (GO:0005789)external side of plasma membrane (GO:0009897)extracellular exosome (GO:0070062)extracellular region (GO:0005576)immune response (GO:0006955)immune response (GO:0006955)immune response (GO:0006955)immune response (GO:0006955)lumenal side of endoplasmic reticulum membrane (GO:0098553)lumenal side of endoplasmic reticulum membrane (GO:0098553)membrane (GO:0016020)membrane (GO:0016020)peptide antigen binding (GO:0042605)peptide antigen binding (GO:0042605)phagocytic vesicle membrane (GO:0030670)phagocytic vesicle membrane (GO:0030670)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)positive regulation of T cell mediated cytotoxicity (GO:0001916)positive regulation of T cell mediated cytotoxicity (GO:0001916)protection from natural killer cell mediated cytotoxicity (GO:0042270)protein binding (GO:0005515)protein-folding chaperone binding (GO:0051087)recycling endosome membrane (GO:0055038)recycling endosome membrane (GO:0055038)regulation of T cell anergy (GO:0002667)regulation of dendritic cell differentiation (GO:2001198)regulation of interleukin-12 production (GO:0032655)regulation of interleukin-6 production (GO:0032675)regulation of natural killer cell mediated immunity (GO:0002715)secretory granule membrane (GO:0030667)signaling receptor binding (GO:0005102)signaling receptor binding (GO:0005102)
Expression (TPM)
HLA-B — as a Regulated Gene

TFs regulating HLA-B 0 TFs

Transcription factors with Perturb-seq knockdown data for HLA-B. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = HLA-B upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to HLA-B

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of HLA-B, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr6:31,157,467–31,159,255 208.7 kb Distal (>10kb) Multiome 740
chr6:31,171,796–31,173,419 195.0 kb Distal (>10kb) Multiome 178
chr6:31,307,823–31,308,922 58.9 kb Distal (>10kb) Multiome 248
chr6:31,366,884–31,367,398 18 bp At TSS Multiome 433
chr6:31,399,631–31,400,231 32.8 kb Distal (>10kb) Multiome 678
chr6:31,403,046–31,404,269 36.5 kb Distal (>10kb) Multiome 796
chr6:31,441,682–31,442,105 74.7 kb Distal (>10kb) Multiome 316
chr6:31,462,703–31,463,323 96.0 kb Distal (>10kb) Multiome 352
chr6:31,497,638–31,498,615 130.9 kb Distal (>10kb) Multiome 613
chr6:31,541,205–31,542,816 175.0 kb Distal (>10kb) Multiome 1073
chr6:31,546,485–31,547,136 179.7 kb Distal (>10kb) Multiome 589
chr6:31,547,301–31,547,742 180.6 kb Distal (>10kb) Multiome 762
chr6:31,580,713–31,581,330 214.0 kb Distal (>10kb) Multiome 745
chr6:31,619,744–31,621,435 253.5 kb Distal (>10kb) Multiome 1127
chr6:31,651,682–31,653,297 285.6 kb Distal (>10kb) Multiome 1113
chr6:31,660,325–31,660,941 293.7 kb Distal (>10kb) Multiome 892
chr6:31,664,725–31,666,373 297.8 kb Distal (>10kb) Multiome 1039

Genome Browser

Genomic view of the HLA-B locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr6:31,147,467 – 31,676,373
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq