Predicted to enable nucleotide binding activity and oxidoreductase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for GFOD2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = GFOD2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of GFOD2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:67,428,012–67,428,783 | 291.0 kb | Distal (>10kb) Multiome | 382 | |
| chr16:67,430,407–67,432,610 | 288.2 kb | Distal (>10kb) Multiome | 790 | |
| chr16:67,480,508–67,481,841 | 238.1 kb | Distal (>10kb) Multiome | 1002 | |
| chr16:67,521,086–67,521,812 | 197.9 kb | Distal (>10kb) Multiome | 775 | |
| chr16:67,528,470–67,529,464 | 190.5 kb | Distal (>10kb) Multiome | 641 | |
| chr16:67,537,215–67,538,620 | 181.3 kb | Distal (>10kb) Multiome | 560 | |
| chr16:67,561,597–67,563,672 | 157.0 kb | Distal (>10kb) Multiome | 1044 | |
| chr16:67,644,719–67,645,304 | 74.4 kb | Distal (>10kb) Multiome | 638 | |
| chr16:67,649,353–67,649,999 | 69.6 kb | Distal (>10kb) Multiome | 112 | |
| chr16:67,652,610–67,653,810 | 66.4 kb | Distal (>10kb) Multiome | 498 | |
| chr16:67,659,631–67,661,707 | 58.5 kb | Distal (>10kb) Multiome HiCAR | 962 | |
| chr16:67,666,180–67,667,235 | 52.7 kb | Distal (>10kb) Multiome HiCAR | 713 | |
| chr16:67,667,674–67,668,349 | 51.2 kb | Distal (>10kb) Multiome HiCAR | 628 | |
| chr16:67,718,772–67,720,138 | 7 bp | At TSS Multiome | 866 | |
| chr16:67,806,066–67,807,386 | 87.4 kb | Distal (>10kb) Multiome | 914 | |
| chr16:67,816,404–67,816,888 | 97.4 kb | Distal (>10kb) Multiome | 690 | |
| chr16:67,833,426–67,834,269 | 114.6 kb | Distal (>10kb) Multiome | 838 | |
| chr16:67,841,337–67,843,276 | 122.8 kb | Distal (>10kb) Multiome | 927 | |
| chr16:67,846,090–67,847,897 | 127.4 kb | Distal (>10kb) Multiome | 1025 | |
| chr16:67,872,739–67,873,665 | 153.7 kb | Distal (>10kb) Multiome | 982 | |
| chr16:67,884,566–67,885,097 | 165.5 kb | Distal (>10kb) Multiome | 264 | |
| chr16:67,892,898–67,893,885 | 173.9 kb | Distal (>10kb) Multiome | 867 | |
| chr16:67,915,108–67,915,887 | 196.1 kb | Distal (>10kb) Multiome | 92 | |
| chr16:67,935,189–67,936,596 | 216.5 kb | Distal (>10kb) Multiome | 980 | |
| chr16:67,963,746–67,964,209 | 244.6 kb | Distal (>10kb) Multiome | 161 | |
| chr16:67,968,087–67,969,341 | 249.3 kb | Distal (>10kb) Multiome | 861 | |
| chr16:67,993,130–67,993,736 | 274.1 kb | Distal (>10kb) Multiome | 790 | |
| chr16:68,019,222–68,020,043 | 300.1 kb | Distal (>10kb) Multiome | 108 |
Genomic view of the GFOD2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.