FLYWCH2
FLYWCH family member 2

Enables RNA binding activity. [provided by Alliance of Genome Resources, Jul 2025]

Member of: DE-1 DE-1.9
Biological processes 1 term
Expression (TPM)
FLYWCH2 — as a Regulated Gene

TFs regulating FLYWCH2 0 TFs

Transcription factors with Perturb-seq knockdown data for FLYWCH2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FLYWCH2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to FLYWCH2

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FLYWCH2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr16:2,603,176–2,603,939 279.8 kb Distal (>10kb) Multiome 1066
chr16:2,673,059–2,673,910 209.7 kb Distal (>10kb) Multiome 471
chr16:2,682,205–2,683,006 200.7 kb Distal (>10kb) Multiome 1003
chr16:2,720,741–2,721,896 161.9 kb Distal (>10kb) Multiome 758
chr16:2,751,637–2,753,398 130.7 kb Distal (>10kb) Multiome 1074
chr16:2,776,766–2,778,256 105.9 kb Distal (>10kb) Multiome 828
chr16:2,867,958–2,868,665 14.8 kb Distal (>10kb) Multiome 960
chr16:2,874,909–2,875,153 8.1 kb Proximal (<10kb) 479
chr16:2,880,803–2,881,008 2.2 kb Proximal (<10kb) 16
chr16:2,882,042–2,883,813 261 bp At TSS Multiome 838
chr16:2,904,002–2,906,321 21.1 kb Distal (>10kb) Multiome 994
chr16:2,911,480–2,912,624 28.7 kb Distal (>10kb) Multiome 784
chr16:2,963,159–2,965,475 80.8 kb Distal (>10kb) Multiome 628
chr16:2,968,641–2,970,561 85.9 kb Distal (>10kb) Multiome 1039
chr16:2,979,651–2,981,140 97.3 kb Distal (>10kb) Multiome 795
chr16:2,981,390–2,982,257 98.6 kb Distal (>10kb) Multiome 460
chr16:3,003,612–3,004,589 120.8 kb Distal (>10kb) Multiome 652
chr16:3,007,583–3,008,956 125.3 kb Distal (>10kb) Multiome 514
chr16:3,009,722–3,010,376 126.8 kb Distal (>10kb) Multiome 395
chr16:3,017,242–3,018,799 135.0 kb Distal (>10kb) Multiome 451
chr16:3,019,969–3,022,268 137.1 kb Distal (>10kb) Multiome 963
chr16:3,022,890–3,024,532 141.0 kb Distal (>10kb) Multiome 933
chr16:3,027,854–3,029,038 145.1 kb Distal (>10kb) Multiome 546
chr16:3,036,222–3,037,148 153.7 kb Distal (>10kb) Multiome 256
chr16:3,045,413–3,047,408 163.0 kb Distal (>10kb) Multiome 510
chr16:3,058,226–3,060,102 176.2 kb Distal (>10kb) Multiome 769
chr16:3,098,550–3,100,475 217.1 kb Distal (>10kb) Multiome 454
chr16:3,106,146–3,106,906 223.4 kb Distal (>10kb) Multiome 851
chr16:3,123,818–3,124,940 241.1 kb Distal (>10kb) Multiome 800
chr16:3,134,425–3,135,445 251.8 kb Distal (>10kb) Multiome 752
chr16:3,149,357–3,151,137 267.4 kb Distal (>10kb) Multiome 975
chr16:3,152,009–3,153,129 269.6 kb Distal (>10kb) Multiome 889
chr16:3,156,990–3,157,742 274.2 kb Distal (>10kb) Multiome 680
chr16:3,158,260–3,159,345 275.6 kb Distal (>10kb) Multiome 764
chr16:3,171,474–3,172,591 288.9 kb Distal (>10kb) Multiome 574
chr16:3,174,125–3,174,566 291.1 kb Distal (>10kb) Multiome 371
chr16:3,175,429–3,175,953 292.5 kb Distal (>10kb) Multiome 483
chr16:3,182,514–3,183,488 299.6 kb Distal (>10kb) Multiome 690

Genome Browser

Genomic view of the FLYWCH2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr16:2,593,176 – 3,193,488
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq