CCDC51
coiled-coil domain containing 51 | FLJ12436, MITOK
CCDC51 — as a Regulated Gene

TFs regulating CCDC51 0 TFs

Transcription factors with Perturb-seq knockdown data for CCDC51. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CCDC51 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to CCDC51

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CCDC51, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr3:48,187,500–48,188,989 251.6 kb Distal (>10kb) Multiome 820
chr3:48,240,728–48,241,473 199.0 kb Distal (>10kb) Multiome HiCAR 843
chr3:48,300,947–48,301,746 138.7 kb Distal (>10kb) Multiome 954
chr3:48,372,864–48,373,543 66.9 kb Distal (>10kb) Multiome 49
chr3:48,428,528–48,430,504 10.1 kb Distal (>10kb) Multiome 910
chr3:48,432,876–48,433,064 7.1 kb Proximal (<10kb) 68
chr3:48,435,863–48,436,304 3.8 kb Proximal (<10kb) 452
chr3:48,439,801–48,440,548 59 bp At TSS Multiome 787
chr3:48,446,396–48,447,180 6.6 kb Proximal (<10kb) Multiome 767
chr3:48,465,344–48,466,310 25.6 kb Distal (>10kb) Multiome 670
chr3:48,472,636–48,473,658 33.1 kb Distal (>10kb) Multiome 821
chr3:48,503,451–48,504,839 64.0 kb Distal (>10kb) Multiome 419
chr3:48,556,022–48,557,666 116.9 kb Distal (>10kb) Multiome 794
chr3:48,558,131–48,558,793 118.3 kb Distal (>10kb) Multiome 503
chr3:48,608,816–48,610,628 169.5 kb Distal (>10kb) Multiome 850
chr3:48,634,696–48,636,251 195.5 kb Distal (>10kb) Multiome 898
chr3:48,655,787–48,657,257 216.3 kb Distal (>10kb) Multiome 438
chr3:48,661,275–48,664,636 221.6 kb Distal (>10kb) Multiome 1248
chr3:48,685,362–48,686,531 245.8 kb Distal (>10kb) Multiome 770
chr3:48,716,958–48,717,863 277.2 kb Distal (>10kb) Multiome 634

Genome Browser

Genomic view of the CCDC51 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr3:48,177,500 – 48,727,863
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq