chr12 : 49,574,219 49,574,522
303 bp 13 TFs 2 linked genes
This 303 bp open chromatin element is linked to PRPF40B and MCRS1 and is bound by 13 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PRPF40B 6.0 kb Proximal Proximity
MCRS1 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:49,569,219 – 49,579,522
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 247 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 303 bp overlap
ChIP DE DE-FOXA2-2 303 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 162 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 303 bp overlap
ChIP DE DE-GATA4-2 303 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 303 bp overlap
ChIP DE DE-GATA6-2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 303 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 223 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCFF683ZWN 289 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 75 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 212 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 303 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 188 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 181 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 173 bp overlap