chr12 : 41,763,938 41,764,322
384 bp 6 TFs 1 linked gene
This 384 bp open chromatin element is linked to LINC02400 and is bound by 6 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02400 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:41,758,938 – 41,769,322
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
6 transcription factors
Source
Cell type
AR 6 datasets
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 174 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 196 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 184 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 157 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 195 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 185 bp overlap
FOXA1 1 dataset
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 172 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 359 bp overlap
ChIP DE DE-FOXA2-2 305 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 138 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 256 bp overlap
ChIP DE DE-GATA4-2 356 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 252 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 264 bp overlap
ChIP DE DE-GATA6-2 331 bp overlap