chr10 : 112,059,138 – 112,059,509
371 bp 6 TFs 0 linked genes
This 371 bp open chromatin element has no linked target genes and is bound by 6 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:112,054,138 – 112,064,509
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
6 transcription factors
Source
Cell type
CTCF 91 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 214 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 138 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 331 bp overlap
ChIP A673 ENCFF123WOM 330 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 162 bp overlap
ChIP BE2C ENCFF757SRF 221 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 174 bp overlap
ChIP C4-2B ENCFF821XVN 311 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 135 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 170 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 154 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 155 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 155 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 103 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 109 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 133 bp overlap
ChIP GM23338 ENCFF531QOI 194 bp overlap
ChIP GM23338 ENCFF772DML 170 bp overlap
ChIP H1 ENCFF230QSV 159 bp overlap
ChIP H1 ENCFF414GZI 179 bp overlap
ChIP H1 ENCFF764RHO 244 bp overlap
ChIP H9 ENCFF152GTF 260 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 280 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 239 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 214 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 174 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 210 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 187 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 209 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 219 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 205 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 237 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 274 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 242 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 141 bp overlap
ChIP HCT116 ENCFF003KHP 316 bp overlap
ChIP HCT116 ENCFF209YMI 225 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 157 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 254 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 256 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 217 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 217 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 210 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 245 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 208 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 240 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 102 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 235 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 223 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 169 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 148 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 120 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 139 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 123 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 261 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 81 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 192 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 208 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 127 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 290 bp overlap
ChIP Loucy ENCFF359TVQ 351 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 234 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 99 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 183 bp overlap
ChIP OCI-LY1 ENCFF455ESK 320 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 350 bp overlap
ChIP Panc1 ENCFF056JQX 371 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 152 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 149 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 117 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 168 bp overlap
ChIP endodermal cell ENCFF471YCZ 203 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 153 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 256 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 233 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 148 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 206 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 190 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 154 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 167 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 155 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 182 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 256 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 176 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 106 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 203 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 111 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 241 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 191 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 146 bp overlap
RAD21 12 datasets
ChIP GP5D GSE51234.RAD21.GP5D 265 bp overlap
ChIP H1 ENCFF698EWO 213 bp overlap
ChIP H1 ENCFF967OJF 218 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 285 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 233 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 216 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 98 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 170 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 225 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 143 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 203 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 264 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 177 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 245 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 135 bp overlap
Huangfu Lab · Publications · Resources · Contact