chr9 : 120,535,185 120,535,479
294 bp 9 TFs 1 linked gene
This 294 bp open chromatin element is linked to CDK5RAP2 and is bound by 9 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CDK5RAP2 957 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:120,530,185 – 120,540,479
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
9 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 95 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 165 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 163 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 95 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 294 bp overlap
ChIP DE DE-FOXA2-2 294 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 294 bp overlap
ChIP DE DE-GATA4-2 294 bp overlap
ChIP foregut GSE117136.GATA4.foregut 294 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 294 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 288 bp overlap
ChIP DE DE-GATA6-2 294 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 294 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 293 bp overlap
ChIP foregut GSE117136.GATA6.foregut 294 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 257 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 245 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 185 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 294 bp overlap