chr9 : 42,965,220 – 42,965,665
445 bp 8 TFs 3 linked genes
This 445 bp open chromatin element is linked to CNN2P4, ENSG00000276128, and ENSG00000293321 and is bound by 8 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CNN2P4 7.6 kb Proximal Proximity
ENSG00000276128 9.2 kb Proximal Proximity
ENSG00000293321 9.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:42,960,220 – 42,970,665
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
8 transcription factors
Source
Cell type
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 445 bp overlap
ChIP DE DE-FOXA2-2 445 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 445 bp overlap
ChIP DE DE-GATA4-2 445 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 445 bp overlap
ChIP DE DE-GATA6-2 438 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 445 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 213 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 432 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 440 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 391 bp overlap
SPI1 1 dataset
ChIP HL-60 ENCFF645GBT 271 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 149 bp overlap
Huangfu Lab · Publications · Resources · Contact