chr9 : 25,803,292 25,803,607
315 bp 11 TFs 1 linked gene
This 315 bp open chromatin element is linked to LINC01241 and is bound by 11 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01241 578 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:25,798,292 – 25,808,607
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
11 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 198 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 315 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 315 bp overlap
BRD4 1 dataset
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 89 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 286 bp overlap
FOXA1 6 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 135 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 208 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 231 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 272 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 143 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 155 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 315 bp overlap
ChIP DE DE-FOXA2-2 242 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 182 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 132 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 298 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 315 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 155 bp overlap
KLF4 2 datasets
ChIP MCF-7 ENCFF948KTQ 315 bp overlap
ChIP MCF-7 ENCFF948KTQ 315 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 315 bp overlap