chr5 : 58,499,337 58,499,557
220 bp 10 TFs 1 linked gene
This 220 bp open chromatin element is linked to GAPT and is bound by 10 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GAPT 7.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:58,494,337 – 58,504,557
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
10 transcription factors
Source
Cell type
CTCF 2 datasets
ChIP astrocyte ENCFF558APA 124 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 121 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 212 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 123 bp overlap
ChIP DE DE-FOXA2-1 220 bp overlap
ChIP DE DE-FOXA2-2 220 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 180 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 220 bp overlap
ChIP DE DE-GATA4-2 220 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 220 bp overlap
ChIP foregut GSE117136.GATA4.foregut 220 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 220 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 220 bp overlap
ChIP DE DE-GATA6-2 220 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 125 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 220 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 220 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 220 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 100 bp overlap
ChIP foregut GSE117136.GATA6.foregut 220 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 220 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 220 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 220 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 209 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 205 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 220 bp overlap
SPI1 1 dataset
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 103 bp overlap