chr4 : 104,499,615 104,499,867
252 bp 13 TFs 2 linked genes
This 252 bp open chromatin element is linked to CXXC4 and CXXC4-AS1 and is bound by 13 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CXXC4 4.7 kb Proximal Proximity
CXXC4-AS1 8.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:104,494,615 – 104,504,867
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 167 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 163 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 252 bp overlap
ChIP DE DE-FOXA2-2 252 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 252 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 252 bp overlap
ChIP DE DE-GATA4-2 252 bp overlap
ChIP foregut GSE117136.GATA4.foregut 215 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 207 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 252 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 252 bp overlap
ChIP DE DE-GATA6-2 252 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 252 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 252 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 223 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 252 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 244 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 252 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 175 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 87 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 231 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 177 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 252 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 252 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 133 bp overlap