chr3 : 146,406,147 146,407,029
882 bp 8 TFs 2 linked genes
This 882 bp open chromatin element is linked to ENSG00000241358 and ENSG00000293191 and is bound by 8 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000241358 9.5 kb Proximal Proximity
ENSG00000293191 9.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:146,401,147 – 146,412,029
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
8 transcription factors
Source
Cell type
AR 11 datasets
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 115 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 220 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 222 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 234 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 189 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 168 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 212 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 176 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 217 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 177 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 196 bp overlap
FOXA1 2 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 163 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 149 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 797 bp overlap
ChIP DE DE-FOXA2-2 651 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 590 bp overlap
ChIP DE DE-GATA4-2 673 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 617 bp overlap
ChIP DE DE-GATA6-2 673 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 265 bp overlap
NR3C1 5 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 181 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 104 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 155 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 87 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 79 bp overlap
PGR 5 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 211 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 341 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 332 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 279 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 321 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 373 bp overlap