chrY : 2,885,346 2,885,656
310 bp 15 TFs 2 linked genes
This 310 bp open chromatin element is linked to HSFY3P and ENSG00000290841 and is bound by 15 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
HSFY3P 1.7 kb Proximal Proximity
ENSG00000290841 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrY:2,880,346 – 2,890,656
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 310 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 81 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 310 bp overlap
ChIP DE DE-GATA4-2 310 bp overlap
ChIP foregut GSE117136.GATA4.foregut 310 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 310 bp overlap
ChIP DE DE-GATA6-2 310 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 266 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 310 bp overlap
ChIP foregut GSE117136.GATA6.foregut 290 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 92 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 134 bp overlap
HNF4G 1 dataset
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 117 bp overlap
NANOG 3 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 138 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 184 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PAXIP1 1 dataset
ChIP HepG2 ENCFF526NOJ 61 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 220 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 263 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 305 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 133 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 310 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 310 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 146 bp overlap