chr20 : 49,939,454 49,939,847
393 bp 15 TFs 1 linked gene
This 393 bp open chromatin element is linked to RNF114 and is bound by 15 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RNF114 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:49,934,454 – 49,944,847
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
Cebpa 5 datasets
ChIP BLaER1 ENCFF031ISE 56 bp overlap
ChIP BLaER1 ENCFF093OYK 69 bp overlap
ChIP BLaER1 ENCFF335XTP 71 bp overlap
ChIP BLaER1 ENCFF364PUR 166 bp overlap
ChIP BLaER1 ENCFF858JKM 68 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 308 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 393 bp overlap
ChIP DE DE-FOXA2-2 393 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 139 bp overlap
ChIP DE DE-GATA4-1 393 bp overlap
ChIP DE DE-GATA4-2 393 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 393 bp overlap
ChIP DE DE-GATA6-2 393 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 393 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 320 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 393 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 329 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 328 bp overlap
PAX8 1 dataset
ChIP MCF-7 ENCFF361SPS 177 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 178 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 393 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 393 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 361 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 393 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 393 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 162 bp overlap
SNAPC4 1 dataset
ChIP HepG2 ENCFF536CFY 381 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 372 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 329 bp overlap
ZFX 3 datasets
ChIP HepG2 ENCFF016NZF 102 bp overlap
ChIP K562 ENCFF536AJO 393 bp overlap
ChIP K562 ENCFF536AJO 224 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF281INV 55 bp overlap