Enables enzyme binding activity. Located in cytoplasmic vesicle membrane; late endosome; and lysosome. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for VOPP1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = VOPP1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of VOPP1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:55,365,242–55,367,047 | 206.4 kb | Distal (>10kb) Multiome | 1023 | |
| chr7:55,568,844–55,569,210 | 2.7 kb | Proximal (<10kb) | 73 | |
| chr7:55,569,764–55,570,111 | 1.8 kb | Proximal (<10kb) | 91 | |
| chr7:55,571,521–55,573,571 | 47 bp | At TSS Multiome | 779 | |
| chr7:55,657,601–55,658,293 | 85.4 kb | Distal (>10kb) Multiome | 209 |
Genomic view of the VOPP1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.