Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the larger subunits of TFIID that has been shown to potentiate transcriptional activation by retinoic acid, thyroid hormone and vitamin D3 receptors. In addition, this subunit interacts with the transcription factor CREB, which has a glutamine-rich activation domain, and binds to other proteins containing glutamine-rich regions. Aberrant binding to this subunit by proteins with expanded polyglutamine regions has been suggested as one of the pathogenetic mechanisms underlying a group of neurodegenerative disorders referred to as polyglutamine diseases. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for TAF4. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TAF4 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TAF4, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr20:62,063,629–62,064,798 | 1.1 kb | Proximal (<10kb) | 496 | |
| chr20:62,065,357–62,067,442 | 180 bp | At TSS Multiome | 841 | |
| chr20:62,121,331–62,123,419 | 56.3 kb | Distal (>10kb) Multiome | 961 | |
| chr20:62,142,789–62,144,593 | 77.6 kb | Distal (>10kb) Multiome | 841 | |
| chr20:62,182,546–62,183,326 | 117.1 kb | Distal (>10kb) Multiome | 1075 | |
| chr20:62,219,369–62,220,936 | 154.4 kb | Distal (>10kb) Multiome | 599 | |
| chr20:62,237,918–62,239,210 | 172.5 kb | Distal (>10kb) Multiome | 794 | |
| chr20:62,301,857–62,303,576 | 236.3 kb | Distal (>10kb) Multiome | 1110 |
Genomic view of the TAF4 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.