The protein encoded by this gene was identified as a regulator of the MAP kinase kinase kinase MAP3K7/TAK1, which is known to mediate various intracellular signaling pathways, such as those induced by TGF beta, interleukin 1, and WNT-1. This protein interacts and thus activates TAK1 kinase. It has been shown that the C-terminal portion of this protein is sufficient for binding and activation of TAK1, while a portion of the N-terminus acts as a dominant-negative inhibitor of TGF beta, suggesting that this protein may function as a mediator between TGF beta receptors and TAK1. This protein can also interact with and activate the mitogen-activated protein kinase 14 (MAPK14/p38alpha), and thus represents an alternative activation pathway, in addition to the MAPKK pathways, which contributes to the biological responses of MAPK14 to various stimuli. Alternatively spliced transcript variants encoding distinct isoforms have been reported. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for TAB1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TAB1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TAB1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr22:39,144,772–39,146,359 | 254.1 kb | Distal (>10kb) Multiome | 668 | |
| chr22:39,152,016–39,153,700 | 247.1 kb | Distal (>10kb) Multiome | 607 | |
| chr22:39,170,852–39,171,359 | 228.7 kb | Distal (>10kb) Multiome | 425 | |
| chr22:39,174,292–39,175,258 | 224.9 kb | Distal (>10kb) Multiome | 688 | |
| chr22:39,179,438–39,180,229 | 220.1 kb | Distal (>10kb) Multiome | 84 | |
| chr22:39,229,884–39,230,835 | 169.6 kb | Distal (>10kb) Multiome | 417 | |
| chr22:39,242,211–39,244,345 | 156.9 kb | Distal (>10kb) Multiome | 605 | |
| chr22:39,310,537–39,311,897 | 88.7 kb | Distal (>10kb) Multiome | 655 | |
| chr22:39,319,163–39,320,470 | 80.1 kb | Distal (>10kb) Multiome | 968 | |
| chr22:39,349,608–39,350,646 | 49.9 kb | Distal (>10kb) Multiome | 412 | |
| chr22:39,388,249–39,388,891 | 11.3 kb | Distal (>10kb) Multiome | 336 | |
| chr22:39,399,211–39,400,196 | 35 bp | At TSS Multiome | 896 | |
| chr22:39,501,766–39,502,757 | 102.5 kb | Distal (>10kb) Multiome | 736 | |
| chr22:39,519,211–39,521,337 | 120.4 kb | Distal (>10kb) Multiome | 1150 | |
| chr22:39,528,868–39,529,848 | 129.6 kb | Distal (>10kb) Multiome | 829 | |
| chr22:39,532,183–39,533,171 | 133.1 kb | Distal (>10kb) Multiome | 799 | |
| chr22:39,534,113–39,535,455 | 135.2 kb | Distal (>10kb) Multiome | 621 | |
| chr22:39,598,010–39,598,521 | 198.6 kb | Distal (>10kb) Multiome | 163 | |
| chr22:39,661,773–39,663,221 | 262.7 kb | Distal (>10kb) Multiome | 260 | |
| chr22:39,663,880–39,665,145 | 264.9 kb | Distal (>10kb) Multiome | 208 |
Genomic view of the TAB1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.