SELENOP
selenoprotein P | SELP, SEPP, SeP, SEPP1

This gene encodes a selenoprotein that is predominantly expressed in the liver and secreted into the plasma. This selenoprotein is unique in that it contains multiple selenocysteine (Sec) residues per polypeptide (10 in human), and accounts for most of the selenium in plasma. It has been implicated as an extracellular antioxidant, and in the transport of selenium to extra-hepatic tissues via apolipoprotein E receptor-2 (apoER2). Mice lacking this gene exhibit neurological dysfunction, suggesting its importance in normal brain function. Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. The mRNA for this selenoprotein contains two SECIS elements. The use of alternative polyadenylation sites, one located in between the two SECIS elements, results in two populations of mRNAs containing either both (predominant) or just the upstream SECIS element (PMID:27881738). Alternatively spliced transcript variants have also been found for this gene. [provided by RefSeq, Oct 2018]

Member of: DE-7 DE-7.1 Developmental clusters: GC7
Biological processes 10 terms
Expression (TPM)
SELENOP — as a Regulated Gene

TFs regulating SELENOP 0 TFs

Transcription factors with Perturb-seq knockdown data for SELENOP. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SELENOP upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to SELENOP

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SELENOP, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr5:41,903,698–41,904,758 907.7 kb Distal (>10kb) Multiome HiCAR 1018
chr5:41,924,742–41,926,001 886.6 kb Distal (>10kb) Multiome HiCAR 1012
chr5:42,756,638–42,757,621 55.0 kb Distal (>10kb) Multiome 314
chr5:42,811,575–42,812,593 225 bp At TSS Multiome 702
chr5:42,813,381–42,813,999 1.9 kb Proximal (<10kb) Multiome 122
chr5:42,893,601–42,894,516 82.1 kb Distal (>10kb) Multiome 155
chr5:42,908,461–42,909,511 97.1 kb Distal (>10kb) Multiome 451
chr5:43,016,201–43,016,848 204.5 kb Distal (>10kb) Multiome 194
chr5:43,017,299–43,018,875 206.1 kb Distal (>10kb) Multiome 870
chr5:43,024,983–43,026,034 213.6 kb Distal (>10kb) Multiome 130
chr5:43,041,652–43,043,529 230.3 kb Distal (>10kb) Multiome 897
chr5:43,064,252–43,065,217 253.1 kb Distal (>10kb) Multiome 959
chr5:43,065,881–43,067,664 254.7 kb Distal (>10kb) Multiome 928
chr5:43,105,415–43,106,204 293.9 kb Distal (>10kb) Multiome 820

Genome Browser

Genomic view of the SELENOP locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr5:41,893,698 – 43,116,204
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq