This gene encodes a selenoprotein that is predominantly expressed in the liver and secreted into the plasma. This selenoprotein is unique in that it contains multiple selenocysteine (Sec) residues per polypeptide (10 in human), and accounts for most of the selenium in plasma. It has been implicated as an extracellular antioxidant, and in the transport of selenium to extra-hepatic tissues via apolipoprotein E receptor-2 (apoER2). Mice lacking this gene exhibit neurological dysfunction, suggesting its importance in normal brain function. Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. The mRNA for this selenoprotein contains two SECIS elements. The use of alternative polyadenylation sites, one located in between the two SECIS elements, results in two populations of mRNAs containing either both (predominant) or just the upstream SECIS element (PMID:27881738). Alternatively spliced transcript variants have also been found for this gene. [provided by RefSeq, Oct 2018]
Transcription factors with Perturb-seq knockdown data for SELENOP. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SELENOP upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SELENOP, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:41,903,698–41,904,758 | 907.7 kb | Distal (>10kb) Multiome HiCAR | 1018 | |
| chr5:41,924,742–41,926,001 | 886.6 kb | Distal (>10kb) Multiome HiCAR | 1012 | |
| chr5:42,756,638–42,757,621 | 55.0 kb | Distal (>10kb) Multiome | 314 | |
| chr5:42,811,575–42,812,593 | 225 bp | At TSS Multiome | 702 | |
| chr5:42,813,381–42,813,999 | 1.9 kb | Proximal (<10kb) Multiome | 122 | |
| chr5:42,893,601–42,894,516 | 82.1 kb | Distal (>10kb) Multiome | 155 | |
| chr5:42,908,461–42,909,511 | 97.1 kb | Distal (>10kb) Multiome | 451 | |
| chr5:43,016,201–43,016,848 | 204.5 kb | Distal (>10kb) Multiome | 194 | |
| chr5:43,017,299–43,018,875 | 206.1 kb | Distal (>10kb) Multiome | 870 | |
| chr5:43,024,983–43,026,034 | 213.6 kb | Distal (>10kb) Multiome | 130 | |
| chr5:43,041,652–43,043,529 | 230.3 kb | Distal (>10kb) Multiome | 897 | |
| chr5:43,064,252–43,065,217 | 253.1 kb | Distal (>10kb) Multiome | 959 | |
| chr5:43,065,881–43,067,664 | 254.7 kb | Distal (>10kb) Multiome | 928 | |
| chr5:43,105,415–43,106,204 | 293.9 kb | Distal (>10kb) Multiome | 820 |
Genomic view of the SELENOP locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.