Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Many of the effects of laminin are mediated through interactions with cell surface receptors. These receptors include members of the integrin family, as well as non-integrin laminin-binding proteins. This gene encodes a high-affinity, non-integrin family, laminin receptor 1. This receptor has been variously called 67 kD laminin receptor, 37 kD laminin receptor precursor (37LRP) and p40 ribosome-associated protein. The amino acid sequence of laminin receptor 1 is highly conserved through evolution, suggesting a key biological function. It has been observed that the level of the laminin receptor transcript is higher in colon carcinoma tissue and lung cancer cell line than their normal counterparts. Also, there is a correlation between the upregulation of this polypeptide in cancer cells and their invasive and metastatic phenotype. Multiple copies of this gene exist, however, most of them are pseudogenes thought to have arisen from retropositional events. Two alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for RPSA. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RPSA upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RPSA, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr3:39,106,596–39,108,201 | 299.1 kb | Distal (>10kb) Multiome | 754 | |
| chr3:39,150,367–39,155,021 | 255.6 kb | Distal (>10kb) Multiome | 1014 | |
| chr3:39,177,458–39,178,406 | 228.7 kb | Distal (>10kb) Multiome | 531 | |
| chr3:39,180,469–39,181,324 | 225.7 kb | Distal (>10kb) Multiome | 541 | |
| chr3:39,288,216–39,288,885 | 118.2 kb | Distal (>10kb) Multiome | 463 | |
| chr3:39,404,841–39,405,400 | 1.7 kb | Proximal (<10kb) Multiome | 137 | |
| chr3:39,406,328–39,407,246 | at TSS | At TSS Multiome | 1019 | |
| chr3:39,413,395–39,416,701 | 6.7 kb | Proximal (<10kb) | 428 | |
| chr3:39,416,815–39,418,027 | 10.8 kb | Distal (>10kb) Multiome | 128 | |
| chr3:39,418,154–39,419,400 | 12.2 kb | Distal (>10kb) Multiome | 58 | |
| chr3:39,498,382–39,499,124 | 92.0 kb | Distal (>10kb) Multiome | 262 | |
| chr3:39,505,565–39,507,064 | 99.6 kb | Distal (>10kb) Multiome | 225 | |
| chr3:39,577,488–39,578,453 | 171.1 kb | Distal (>10kb) Multiome | 139 | |
| chr3:39,665,431–39,666,067 | 258.9 kb | Distal (>10kb) Multiome | 44 |
Genomic view of the RPSA locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.