RPSA
ribosomal protein SA | 37LRP, LRP, SA, p40, uS2, LAMR1

Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Many of the effects of laminin are mediated through interactions with cell surface receptors. These receptors include members of the integrin family, as well as non-integrin laminin-binding proteins. This gene encodes a high-affinity, non-integrin family, laminin receptor 1. This receptor has been variously called 67 kD laminin receptor, 37 kD laminin receptor precursor (37LRP) and p40 ribosome-associated protein. The amino acid sequence of laminin receptor 1 is highly conserved through evolution, suggesting a key biological function. It has been observed that the level of the laminin receptor transcript is higher in colon carcinoma tissue and lung cancer cell line than their normal counterparts. Also, there is a correlation between the upregulation of this polypeptide in cancer cells and their invasive and metastatic phenotype. Multiple copies of this gene exist, however, most of them are pseudogenes thought to have arisen from retropositional events. Two alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

Member of: DE-1 DE-1.1 Developmental clusters: GC5
Biological processes 39 terms
Expression (TPM)
RPSA — as a Regulated Gene

TFs regulating RPSA 0 TFs

Transcription factors with Perturb-seq knockdown data for RPSA. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RPSA upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to RPSA

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RPSA, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr3:39,106,596–39,108,201 299.1 kb Distal (>10kb) Multiome 754
chr3:39,150,367–39,155,021 255.6 kb Distal (>10kb) Multiome 1014
chr3:39,177,458–39,178,406 228.7 kb Distal (>10kb) Multiome 531
chr3:39,180,469–39,181,324 225.7 kb Distal (>10kb) Multiome 541
chr3:39,288,216–39,288,885 118.2 kb Distal (>10kb) Multiome 463
chr3:39,404,841–39,405,400 1.7 kb Proximal (<10kb) Multiome 137
chr3:39,406,328–39,407,246 at TSS At TSS Multiome 1019
chr3:39,413,395–39,416,701 6.7 kb Proximal (<10kb) 428
chr3:39,416,815–39,418,027 10.8 kb Distal (>10kb) Multiome 128
chr3:39,418,154–39,419,400 12.2 kb Distal (>10kb) Multiome 58
chr3:39,498,382–39,499,124 92.0 kb Distal (>10kb) Multiome 262
chr3:39,505,565–39,507,064 99.6 kb Distal (>10kb) Multiome 225
chr3:39,577,488–39,578,453 171.1 kb Distal (>10kb) Multiome 139
chr3:39,665,431–39,666,067 258.9 kb Distal (>10kb) Multiome 44

Genome Browser

Genomic view of the RPSA locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr3:39,096,596 – 39,676,067
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq