Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S11P family of ribosomal proteins. It is located in the cytoplasm. Transcript variants utilizing alternative transcription initiation sites have been described in the literature. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. In Chinese hamster ovary cells, mutations in this gene can lead to resistance to emetine, a protein synthesis inhibitor. Multiple alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for RPS14. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RPS14 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RPS14, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:150,161,225–150,162,105 | 288.1 kb | Distal (>10kb) Multiome | 389 | |
| chr5:150,211,110–150,211,964 | 238.2 kb | Distal (>10kb) Multiome | 131 | |
| chr5:150,302,023–150,303,433 | 146.9 kb | Distal (>10kb) Multiome | 377 | |
| chr5:150,357,249–150,358,378 | 92.1 kb | Distal (>10kb) Multiome | 746 | |
| chr5:150,409,825–150,410,350 | 39.7 kb | Distal (>10kb) Multiome | 299 | |
| chr5:150,412,530–150,413,063 | 37.0 kb | Distal (>10kb) Multiome | 495 | |
| chr5:150,441,289–150,442,097 | 8.1 kb | Proximal (<10kb) Multiome | 188 | |
| chr5:150,449,356–150,450,212 | 150 bp | At TSS Multiome | 1068 | |
| chr5:150,458,741–150,459,365 | 9.3 kb | Proximal (<10kb) Multiome | 430 | |
| chr5:150,485,401–150,487,150 | 36.0 kb | Distal (>10kb) Multiome | 761 | |
| chr5:150,577,977–150,578,481 | 128.6 kb | Distal (>10kb) Multiome | 149 | |
| chr5:150,624,424–150,625,067 | 175.0 kb | Distal (>10kb) Multiome | 250 | |
| chr5:150,656,143–150,657,405 | 207.0 kb | Distal (>10kb) Multiome | 607 | |
| chr5:150,670,030–150,670,981 | 220.8 kb | Distal (>10kb) Multiome HiCAR | 69 | |
| chr5:150,671,571–150,672,919 | 222.7 kb | Distal (>10kb) Multiome HiCAR | 303 | |
| chr5:150,700,548–150,701,464 | 251.3 kb | Distal (>10kb) Multiome | 858 |
Genomic view of the RPS14 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.