Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a cytoplasmic ribosomal protein that is a component of the 60S subunit. The protein belongs to the L22E family of ribosomal proteins. Its initiating methionine residue is post-translationally removed. The protein can bind specifically to Epstein-Barr virus-encoded RNAs (EBERs) 1 and 2. The mouse protein has been shown to be capable of binding to heparin. Transcript variants utilizing alternative polyA signals exist. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. It was previously thought that this gene mapped to 3q26 and that it was fused to the acute myeloid leukemia 1 (AML1) gene located at 21q22 in some therapy-related myelodysplastic syndrome patients with 3;21 translocations; however, these fusions actually involve a ribosomal protein L22 pseudogene located at 3q26, and this gene actually maps to 1p36.3-p36.2. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for RPL22. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RPL22 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RPL22, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:5,980,417–5,980,986 | 220.2 kb | Distal (>10kb) Multiome | 282 | |
| chr1:5,991,687–5,993,712 | 208.3 kb | Distal (>10kb) Multiome | 829 | |
| chr1:6,127,538–6,128,516 | 72.9 kb | Distal (>10kb) Multiome | 300 | |
| chr1:6,148,503–6,149,108 | 52.0 kb | Distal (>10kb) Multiome | 254 | |
| chr1:6,199,148–6,200,364 | 1.1 kb | Proximal (<10kb) Multiome | 992 | |
| chr1:6,204,893–6,206,690 | 4.4 kb | Proximal (<10kb) Multiome | 913 | |
| chr1:6,208,737–6,209,635 | 8.5 kb | Proximal (<10kb) Multiome | 362 | |
| chr1:6,235,160–6,236,710 | 35.2 kb | Distal (>10kb) Multiome | 673 | |
| chr1:6,241,773–6,242,771 | 41.4 kb | Distal (>10kb) Multiome | 241 | |
| chr1:6,244,532–6,247,144 | 45.2 kb | Distal (>10kb) Multiome | 1073 | |
| chr1:6,248,779–6,250,153 | 48.7 kb | Distal (>10kb) Multiome | 287 | |
| chr1:6,259,688–6,261,954 | 59.3 kb | Distal (>10kb) Multiome | 550 | |
| chr1:6,392,724–6,394,325 | 192.8 kb | Distal (>10kb) Multiome | 819 | |
| chr1:6,418,998–6,420,339 | 219.0 kb | Distal (>10kb) Multiome | 335 | |
| chr1:6,440,165–6,441,114 | 239.8 kb | Distal (>10kb) Multiome | 215 | |
| chr1:6,446,981–6,449,427 | 246.3 kb | Distal (>10kb) Multiome | 665 | |
| chr1:6,455,053–6,455,773 | 254.5 kb | Distal (>10kb) Multiome | 105 | |
| chr1:6,470,716–6,471,189 | 270.1 kb | Distal (>10kb) Multiome | 148 | |
| chr1:6,471,308–6,471,972 | 270.7 kb | Distal (>10kb) Multiome | 192 | |
| chr1:6,486,194–6,486,953 | 285.8 kb | Distal (>10kb) Multiome | 416 | |
| chr1:6,489,772–6,491,050 | 289.3 kb | Distal (>10kb) Multiome | 676 | |
| chr1:6,497,162–6,497,841 | 296.7 kb | Distal (>10kb) Multiome | 324 |
Genomic view of the RPL22 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.