RPL22
ribosomal protein L22 | EAP, L22, eL22

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a cytoplasmic ribosomal protein that is a component of the 60S subunit. The protein belongs to the L22E family of ribosomal proteins. Its initiating methionine residue is post-translationally removed. The protein can bind specifically to Epstein-Barr virus-encoded RNAs (EBERs) 1 and 2. The mouse protein has been shown to be capable of binding to heparin. Transcript variants utilizing alternative polyA signals exist. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. It was previously thought that this gene mapped to 3q26 and that it was fused to the acute myeloid leukemia 1 (AML1) gene located at 21q22 in some therapy-related myelodysplastic syndrome patients with 3;21 translocations; however, these fusions actually involve a ribosomal protein L22 pseudogene located at 3q26, and this gene actually maps to 1p36.3-p36.2. [provided by RefSeq, Jul 2008]

Member of: DE-1 DE-1.46 Developmental clusters: GC5
Biological processes 34 terms
Expression (TPM)
RPL22 — as a Regulated Gene

TFs regulating RPL22 0 TFs

Transcription factors with Perturb-seq knockdown data for RPL22. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RPL22 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to RPL22

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RPL22, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr1:5,980,417–5,980,986 220.2 kb Distal (>10kb) Multiome 282
chr1:5,991,687–5,993,712 208.3 kb Distal (>10kb) Multiome 829
chr1:6,127,538–6,128,516 72.9 kb Distal (>10kb) Multiome 300
chr1:6,148,503–6,149,108 52.0 kb Distal (>10kb) Multiome 254
chr1:6,199,148–6,200,364 1.1 kb Proximal (<10kb) Multiome 992
chr1:6,204,893–6,206,690 4.4 kb Proximal (<10kb) Multiome 913
chr1:6,208,737–6,209,635 8.5 kb Proximal (<10kb) Multiome 362
chr1:6,235,160–6,236,710 35.2 kb Distal (>10kb) Multiome 673
chr1:6,241,773–6,242,771 41.4 kb Distal (>10kb) Multiome 241
chr1:6,244,532–6,247,144 45.2 kb Distal (>10kb) Multiome 1073
chr1:6,248,779–6,250,153 48.7 kb Distal (>10kb) Multiome 287
chr1:6,259,688–6,261,954 59.3 kb Distal (>10kb) Multiome 550
chr1:6,392,724–6,394,325 192.8 kb Distal (>10kb) Multiome 819
chr1:6,418,998–6,420,339 219.0 kb Distal (>10kb) Multiome 335
chr1:6,440,165–6,441,114 239.8 kb Distal (>10kb) Multiome 215
chr1:6,446,981–6,449,427 246.3 kb Distal (>10kb) Multiome 665
chr1:6,455,053–6,455,773 254.5 kb Distal (>10kb) Multiome 105
chr1:6,470,716–6,471,189 270.1 kb Distal (>10kb) Multiome 148
chr1:6,471,308–6,471,972 270.7 kb Distal (>10kb) Multiome 192
chr1:6,486,194–6,486,953 285.8 kb Distal (>10kb) Multiome 416
chr1:6,489,772–6,491,050 289.3 kb Distal (>10kb) Multiome 676
chr1:6,497,162–6,497,841 296.7 kb Distal (>10kb) Multiome 324

Genome Browser

Genomic view of the RPL22 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr1:5,970,417 – 6,507,841
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq