RIC8B
RIC8 guanine nucleotide exchange factor B | FLJ10620, RIC8, hSyn
RIC8B — as a Regulated Gene

TFs regulating RIC8B 0 TFs

Transcription factors with Perturb-seq knockdown data for RIC8B. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RIC8B upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to RIC8B

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RIC8B, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr12:106,581,330–106,582,388 192.9 kb Distal (>10kb) Multiome 219
chr12:106,582,587–106,584,555 191.6 kb Distal (>10kb) Multiome 216
chr12:106,585,673–106,587,837 187.3 kb Distal (>10kb) Multiome 248
chr12:106,768,052–106,768,482 6.1 kb Proximal (<10kb) 190
chr12:106,773,771–106,775,183 227 bp At TSS Multiome 953
chr12:106,903,307–106,903,916 129.1 kb Distal (>10kb) Multiome 193
chr12:106,954,854–106,956,979 181.1 kb Distal (>10kb) Multiome 927
chr12:106,986,640–106,987,674 212.6 kb Distal (>10kb) Multiome 764

Genome Browser

Genomic view of the RIC8B locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr12:106,571,330 – 106,997,674
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq