This gene encodes one of the catalytic subunits of protein kinase A, which exists as a tetrameric holoenzyme with two regulatory subunits and two catalytic subunits, in its inactive form. cAMP causes the dissociation of the inactive holoenzyme into a dimer of regulatory subunits bound to four cAMP and two free monomeric catalytic subunits. Four different regulatory subunits and three catalytic subunits have been identified in humans. cAMP-dependent phosphorylation of proteins by protein kinase A is important to many cellular processes, including differentiation, proliferation, and apoptosis. Constitutive activation of this gene caused either by somatic mutations, or genomic duplications of regions that include this gene, have been associated with hyperplasias and adenomas of the adrenal cortex and are linked to corticotropin-independent Cushing's syndrome. Alternative splicing results in multiple transcript variants encoding different isoforms. Tissue-specific isoforms that differ at the N-terminus have been described, and these isoforms may differ in the post-translational modifications that occur at the N-terminus of some isoforms. [provided by RefSeq, Jan 2015]
Transcription factors with Perturb-seq knockdown data for PRKACA. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PRKACA upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PRKACA, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:13,817,290–13,818,525 | 299.8 kb | Distal (>10kb) Multiome | 368 | |
| chr19:13,833,328–13,834,074 | 284.0 kb | Distal (>10kb) Multiome | 638 | |
| chr19:13,841,592–13,843,282 | 274.9 kb | Distal (>10kb) Multiome | 600 | |
| chr19:13,846,368–13,848,126 | 270.0 kb | Distal (>10kb) Multiome | 1040 | |
| chr19:13,850,226–13,850,701 | 267.2 kb | Distal (>10kb) Multiome | 516 | |
| chr19:13,861,855–13,862,533 | 255.4 kb | Distal (>10kb) Multiome | 655 | |
| chr19:13,872,706–13,873,325 | 244.7 kb | Distal (>10kb) Multiome | 254 | |
| chr19:13,879,942–13,880,779 | 237.5 kb | Distal (>10kb) Multiome | 780 | |
| chr19:13,905,895–13,906,734 | 211.6 kb | Distal (>10kb) Multiome | 835 | |
| chr19:13,951,898–13,953,117 | 165.4 kb | Distal (>10kb) Multiome | 667 | |
| chr19:13,962,408–13,964,055 | 154.0 kb | Distal (>10kb) Multiome | 166 | |
| chr19:13,978,193–13,979,385 | 139.1 kb | Distal (>10kb) Multiome | 238 | |
| chr19:14,005,474–14,007,363 | 111.2 kb | Distal (>10kb) Multiome | 1098 | |
| chr19:14,031,574–14,032,483 | 85.6 kb | Distal (>10kb) Multiome | 726 | |
| chr19:14,057,383–14,057,841 | 60.1 kb | Distal (>10kb) Multiome | 244 | |
| chr19:14,071,936–14,072,417 | 45.5 kb | Distal (>10kb) Multiome | 676 | |
| chr19:14,072,991–14,073,911 | 44.1 kb | Distal (>10kb) Multiome | 589 | |
| chr19:14,081,022–14,082,024 | 36.3 kb | Distal (>10kb) Multiome | 806 | |
| chr19:14,089,535–14,092,049 | 26.7 kb | Distal (>10kb) Multiome | 766 | |
| chr19:14,117,519–14,118,617 | 201 bp | At TSS Multiome | 734 | |
| chr19:14,136,079–14,137,770 | 19.1 kb | Distal (>10kb) Multiome | 978 | |
| chr19:14,206,623–14,207,699 | 89.4 kb | Distal (>10kb) Multiome | 444 | |
| chr19:14,247,378–14,248,008 | 129.8 kb | Distal (>10kb) Multiome | 109 | |
| chr19:14,248,166–14,249,635 | 131.0 kb | Distal (>10kb) Multiome | 230 | |
| chr19:14,264,813–14,266,130 | 147.7 kb | Distal (>10kb) Multiome | 223 | |
| chr19:14,294,831–14,295,420 | 177.4 kb | Distal (>10kb) Multiome | 60 | |
| chr19:14,363,590–14,364,020 | 245.9 kb | Distal (>10kb) Multiome | 402 | |
| chr19:14,405,442–14,406,893 | 288.4 kb | Distal (>10kb) Multiome | 662 |
Genomic view of the PRKACA locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.