PRKACA
protein kinase cAMP-activated catalytic subunit alpha | PKACa

This gene encodes one of the catalytic subunits of protein kinase A, which exists as a tetrameric holoenzyme with two regulatory subunits and two catalytic subunits, in its inactive form. cAMP causes the dissociation of the inactive holoenzyme into a dimer of regulatory subunits bound to four cAMP and two free monomeric catalytic subunits. Four different regulatory subunits and three catalytic subunits have been identified in humans. cAMP-dependent phosphorylation of proteins by protein kinase A is important to many cellular processes, including differentiation, proliferation, and apoptosis. Constitutive activation of this gene caused either by somatic mutations, or genomic duplications of regions that include this gene, have been associated with hyperplasias and adenomas of the adrenal cortex and are linked to corticotropin-independent Cushing's syndrome. Alternative splicing results in multiple transcript variants encoding different isoforms. Tissue-specific isoforms that differ at the N-terminus have been described, and these isoforms may differ in the post-translational modifications that occur at the N-terminus of some isoforms. [provided by RefSeq, Jan 2015]

Developmental clusters: GC6
Biological processes 110 terms
ATP binding (GO:0005524)acrosomal vesicle (GO:0001669)acrosomal vesicle (GO:0001669)adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189)adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189)adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (GO:0007193)axoneme (GO:0005930)cAMP-dependent protein kinase activity (GO:0004691)cAMP-dependent protein kinase activity (GO:0004691)cAMP-dependent protein kinase activity (GO:0004691)cAMP-dependent protein kinase activity (GO:0004691)cAMP-dependent protein kinase activity (GO:0004691)cAMP-dependent protein kinase activity (GO:0004691)cAMP-dependent protein kinase complex (GO:0005952)cAMP-dependent protein kinase complex (GO:0005952)cAMP-dependent protein kinase complex (GO:0005952)cAMP-dependent protein kinase complex (GO:0005952)cAMP/PKA signal transduction (GO:0141156)calcium channel complex (GO:0034704)cell communication by electrical coupling involved in cardiac conduction (GO:0086064)cellular response to epinephrine stimulus (GO:0071872)cellular response to glucagon stimulus (GO:0071377)cellular response to glucose stimulus (GO:0071333)cellular response to heat (GO:0034605)centrosome (GO:0005813)channel activator activity (GO:0099103)chromatin remodeling (GO:0006338)ciliary base (GO:0097546)ciliary base (GO:0097546)cytokine-mediated signaling pathway (GO:0019221)cytoplasm (GO:0005737)cytoplasm (GO:0005737)cytoplasm (GO:0005737)cytosol (GO:0005829)cytosol (GO:0005829)cytosol (GO:0005829)extracellular exosome (GO:0070062)glutamatergic synapse (GO:0098978)high-density lipoprotein particle assembly (GO:0034380)histone H1-4S35 kinase activity (GO:0140198)intracellular potassium ion homeostasis (GO:0030007)lipid droplet (GO:0005811)mRNA processing (GO:0006397)magnesium ion binding (GO:0000287)manganese ion binding (GO:0030145)membrane (GO:0016020)mitochondrial matrix (GO:0005759)mitochondrial protein catabolic process (GO:0035694)mitochondrion (GO:0005739)motile cilium (GO:0031514)negative regulation of TORC1 signaling (GO:1904262)negative regulation of glycolytic process (GO:0045820)negative regulation of glycolytic process through fructose-6-phosphate (GO:1904539)negative regulation of interleukin-2 production (GO:0032703)negative regulation of protein localization to chromatin (GO:0120186)negative regulation of smoothened signaling pathway (GO:0045879)negative regulation of smoothened signaling pathway (GO:0045879)neuromuscular junction (GO:0031594)nuclear speck (GO:0016607)nucleoplasm (GO:0005654)nucleotide-activated protein kinase complex (GO:0031588)nucleus (GO:0005634)nucleus (GO:0005634)nucleus (GO:0005634)nucleus (GO:0005634)perinuclear region of cytoplasm (GO:0048471)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane raft (GO:0044853)positive regulation of calcium-mediated signaling (GO:0050850)positive regulation of cholesterol biosynthetic process (GO:0045542)positive regulation of gluconeogenesis (GO:0045722)positive regulation of insulin secretion (GO:0032024)positive regulation of phagocytosis (GO:0050766)positive regulation of triglyceride catabolic process (GO:0010898)postsynapse (GO:0098794)postsynaptic modulation of chemical synaptic transmission (GO:0099170)potassium channel inhibitor activity (GO:0019870)protein binding (GO:0005515)protein domain specific binding (GO:0019904)protein kinase A regulatory subunit binding (GO:0034237)protein kinase A regulatory subunit binding (GO:0034237)protein kinase A regulatory subunit binding (GO:0034237)protein kinase activity (GO:0004672)protein kinase binding (GO:0019901)protein phosphorylation (GO:0006468)protein serine kinase activity (GO:0106310)protein serine kinase activity (GO:0106310)protein serine/threonine kinase activity (GO:0004674)protein serine/threonine kinase activity (GO:0004674)protein serine/threonine kinase activity (GO:0004674)protein serine/threonine kinase activity (GO:0004674)protein serine/threonine/tyrosine kinase activity (GO:0004712)regulation of bicellular tight junction assembly (GO:2000810)regulation of cardiac conduction (GO:1903779)regulation of cardiac muscle contraction (GO:0055117)regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion (GO:0010881)regulation of cell cycle (GO:0051726)regulation of cell cycle (GO:0051726)regulation of heart rate (GO:0002027)regulation of macroautophagy (GO:0016241)regulation of microtubule cytoskeleton organization (GO:0070507)regulation of osteoblast differentiation (GO:0045667)regulation of proteasomal protein catabolic process (GO:0061136)renal water homeostasis (GO:0003091)sperm capacitation (GO:0048240)sperm capacitation (GO:0048240)sperm flagellum (GO:0036126)sperm midpiece (GO:0097225)vascular endothelial cell response to laminar fluid shear stress (GO:0097700)
Expression (TPM)
PRKACA — as a Regulated Gene

TFs regulating PRKACA 0 TFs

Transcription factors with Perturb-seq knockdown data for PRKACA. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PRKACA upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PRKACA

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PRKACA, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr19:13,817,290–13,818,525 299.8 kb Distal (>10kb) Multiome 368
chr19:13,833,328–13,834,074 284.0 kb Distal (>10kb) Multiome 638
chr19:13,841,592–13,843,282 274.9 kb Distal (>10kb) Multiome 600
chr19:13,846,368–13,848,126 270.0 kb Distal (>10kb) Multiome 1040
chr19:13,850,226–13,850,701 267.2 kb Distal (>10kb) Multiome 516
chr19:13,861,855–13,862,533 255.4 kb Distal (>10kb) Multiome 655
chr19:13,872,706–13,873,325 244.7 kb Distal (>10kb) Multiome 254
chr19:13,879,942–13,880,779 237.5 kb Distal (>10kb) Multiome 780
chr19:13,905,895–13,906,734 211.6 kb Distal (>10kb) Multiome 835
chr19:13,951,898–13,953,117 165.4 kb Distal (>10kb) Multiome 667
chr19:13,962,408–13,964,055 154.0 kb Distal (>10kb) Multiome 166
chr19:13,978,193–13,979,385 139.1 kb Distal (>10kb) Multiome 238
chr19:14,005,474–14,007,363 111.2 kb Distal (>10kb) Multiome 1098
chr19:14,031,574–14,032,483 85.6 kb Distal (>10kb) Multiome 726
chr19:14,057,383–14,057,841 60.1 kb Distal (>10kb) Multiome 244
chr19:14,071,936–14,072,417 45.5 kb Distal (>10kb) Multiome 676
chr19:14,072,991–14,073,911 44.1 kb Distal (>10kb) Multiome 589
chr19:14,081,022–14,082,024 36.3 kb Distal (>10kb) Multiome 806
chr19:14,089,535–14,092,049 26.7 kb Distal (>10kb) Multiome 766
chr19:14,117,519–14,118,617 201 bp At TSS Multiome 734
chr19:14,136,079–14,137,770 19.1 kb Distal (>10kb) Multiome 978
chr19:14,206,623–14,207,699 89.4 kb Distal (>10kb) Multiome 444
chr19:14,247,378–14,248,008 129.8 kb Distal (>10kb) Multiome 109
chr19:14,248,166–14,249,635 131.0 kb Distal (>10kb) Multiome 230
chr19:14,264,813–14,266,130 147.7 kb Distal (>10kb) Multiome 223
chr19:14,294,831–14,295,420 177.4 kb Distal (>10kb) Multiome 60
chr19:14,363,590–14,364,020 245.9 kb Distal (>10kb) Multiome 402
chr19:14,405,442–14,406,893 288.4 kb Distal (>10kb) Multiome 662

Genome Browser

Genomic view of the PRKACA locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr19:13,807,290 – 14,416,893
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq