PLEC
plectin | PCN, PLTN, EBS1, PLEC1

Plectin is a prominent member of an important family of structurally and in part functionally related proteins, termed plakins or cytolinkers, that are capable of interlinking different elements of the cytoskeleton. Plakins, with their multi-domain structure and enormous size, not only play crucial roles in maintaining cell and tissue integrity and orchestrating dynamic changes in cytoarchitecture and cell shape, but also serve as scaffolding platforms for the assembly, positioning, and regulation of signaling complexes (reviewed in PMID: 9701547, 11854008, and 17499243). Plectin is expressed as several protein isoforms in a wide range of cell types and tissues from a single gene located on chromosome 8 in humans (PMID: 8633055, 8698233). Until 2010, this locus was named plectin 1 (symbol PLEC1 in human; Plec1 in mouse and rat) and the gene product had been referred to as "hemidesmosomal protein 1" or "plectin 1, intermediate filament binding 500kDa". These names were superseded by plectin. The plectin gene locus in mouse on chromosome 15 has been analyzed in detail (PMID: 10556294, 14559777), revealing a genomic exon-intron organization with well over 40 exons spanning over 62 kb and an unusual 5' transcript complexity of plectin isoforms. Eleven exons (1-1j) have been identified that alternatively splice directly into a common exon 2 which is the first exon to encode plectin's highly conserved actin binding domain (ABD). Three additional exons (-1, 0a, and 0) splice into an alternative first coding exon (1c), and two additional exons (2alpha and 3alpha) are optionally spliced within the exons encoding the acting binding domain (exons 2-8). Analysis of the human locus has identified eight of the eleven alternative 5' exons found in mouse and rat (PMID: 14672974); exons 1i, 1j and 1h have not been confirmed in human. Furthermore, isoforms lacking the central rod domain encoded by exon 31 have been detected in mouse (PMID:10556294), rat (PMID: 9177781), and human (PMID: 11441066, 10780662, 20052759). The short alternative amino-terminal sequences encoded by the different first exons direct the targeting of the various isoforms to distinct subcellular locations (PMID: 14559777). As the expression of specific plectin isoforms was found to be dependent on cell type (tissue) and stage of development (PMID: 10556294, 12542521, 17389230) it appears that each cell type (tissue) contains a unique set (proportion and composition) of plectin isoforms, as if custom-made for specific requirements of the particular cells. Concordantly, individual isoforms were found to carry out distinct and specific functions (PMID: 14559777, 12542521, 18541706). In 1996, a number of groups reported that patients suffering from epidermolysis bullosa simplex with muscular dystrophy (EBS-MD) lacked plectin expression in skin and muscle tissues due to defects in the plectin gene (PMID: 8698233, 8941634, 8636409, 8894687, 8696340). Two other subtypes of plectin-related EBS have been described: EBS-pyloric atresia (PA) and EBS-Ogna. For reviews of plectin-related diseases see PMID: 15810881, 19945614. Mutations in the plectin gene related to human diseases should be named based on the position in NM_000445 (variant 1, isoform 1c), unless the mutation is located within one of the other alternative first exons, in which case the position in the respective Reference Sequence should be used. [provided by RefSeq, Aug 2011]

Member of: DE-5 DE-5.10 Developmental clusters: GC6
Biological processes 86 terms
RNA binding (GO:0003723)T cell chemotaxis (GO:0010818)Z disc (GO:0030018)actin binding (GO:0003779)actin cytoskeleton organization (GO:0030036)actin filament binding (GO:0051015)actin filament organization (GO:0007015)actomyosin contractile ring assembly actin filament organization (GO:2000689)adherens junction organization (GO:0034332)ankyrin binding (GO:0030506)ankyrin binding (GO:0030506)axon (GO:0030424)brush border (GO:0005903)cadherin binding (GO:0045296)cardiac muscle cell development (GO:0055013)cell morphogenesis (GO:0000902)cell motility (GO:0048870)cell periphery (GO:0071944)cellular response to fluid shear stress (GO:0071498)cellular response to hydrostatic pressure (GO:0071464)cellular response to mechanical stimulus (GO:0071260)contractile muscle fiber (GO:0043292)costamere (GO:0043034)cytoplasm (GO:0005737)cytoplasm (GO:0005737)cytoskeletal protein binding (GO:0008092)cytoskeleton (GO:0005856)cytosol (GO:0005829)dystroglycan binding (GO:0002162)establishment of skin barrier (GO:0061436)extracellular exosome (GO:0070062)fibroblast migration (GO:0010761)focal adhesion (GO:0005925)focal adhesion (GO:0005925)focal adhesion (GO:0005925)gene expression (GO:0010467)hemidesmosome (GO:0030056)hemidesmosome (GO:0030056)hemidesmosome (GO:0030056)hemidesmosome (GO:0030056)hemidesmosome assembly (GO:0031581)hemidesmosome assembly (GO:0031581)identical protein binding (GO:0042802)intermediate filament (GO:0005882)intermediate filament cytoskeleton (GO:0045111)intermediate filament cytoskeleton organization (GO:0045104)intermediate filament cytoskeleton organization (GO:0045104)intermediate filament organization (GO:0045109)intracellular protein localization (GO:0008104)keratinocyte development (GO:0003334)keratinocyte differentiation (GO:0030216)leukocyte migration involved in immune response (GO:0002522)mitochondrial outer membrane (GO:0005741)mitochondrion organization (GO:0007005)multicellular organism growth (GO:0035264)myelin sheath (GO:0043209)myelination in peripheral nervous system (GO:0022011)myoblast differentiation (GO:0045445)myofibril (GO:0030016)myofibril (GO:0030016)nucleus organization (GO:0006997)perinuclear region of cytoplasm (GO:0048471)peripheral nervous system myelin maintenance (GO:0032287)plasma membrane (GO:0005886)podosome (GO:0002102)podosome (GO:0002102)protein binding (GO:0005515)protein-containing complex organization (GO:0043933)regulation of vascular permeability (GO:0043114)respiratory electron transport chain (GO:0022904)response to food (GO:0032094)sarcolemma (GO:0042383)sarcolemma (GO:0042383)sarcolemma (GO:0042383)sarcolemma (GO:0042383)sarcomere organization (GO:0045214)sarcoplasm (GO:0016528)skeletal muscle fiber development (GO:0048741)skeletal muscle tissue development (GO:0007519)skeletal myofibril assembly (GO:0014866)skin development (GO:0043588)structural constituent of cytoskeleton (GO:0005200)structural constituent of muscle (GO:0008307)structural constituent of muscle (GO:0008307)tight junction organization (GO:0120193)wound healing (GO:0042060)
Expression (TPM)
PLEC — as a Regulated Gene

TFs regulating PLEC 0 TFs

Transcription factors with Perturb-seq knockdown data for PLEC. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PLEC upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PLEC

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PLEC, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr8:143,608,979–143,610,357 344.2 kb Distal (>10kb) Multiome HiCAR 735
chr8:143,617,068–143,618,380 336.3 kb Distal (>10kb) Multiome HiCAR 823
chr8:143,684,308–143,684,747 269.5 kb Distal (>10kb) Multiome 686
chr8:143,716,075–143,716,913 237.6 kb Distal (>10kb) Multiome 311
chr8:143,733,345–143,734,440 220.1 kb Distal (>10kb) Multiome 663
chr8:143,740,039–143,740,754 213.4 kb Distal (>10kb) Multiome 308
chr8:143,771,202–143,772,221 182.1 kb Distal (>10kb) Multiome 405
chr8:143,814,945–143,816,493 138.1 kb Distal (>10kb) Multiome 893
chr8:143,828,724–143,829,946 124.5 kb Distal (>10kb) Multiome 933
chr8:143,840,284–143,841,979 112.8 kb Distal (>10kb) Multiome 551
chr8:143,877,814–143,879,346 75.4 kb Distal (>10kb) Multiome 444
chr8:143,941,814–143,942,929 11.7 kb Distal (>10kb) Multiome 630
chr8:143,943,562–143,944,432 9.9 kb Proximal (<10kb) Multiome 587
chr8:143,951,583–143,954,394 94 bp At TSS Multiome 943
chr8:143,972,817–143,973,908 19.6 kb Distal (>10kb) Multiome 436
chr8:143,974,919–143,975,295 1.4 kb Proximal (<10kb) 514
chr8:143,976,288–143,977,568 23.1 kb Distal (>10kb) Multiome 738
chr8:143,982,489–143,982,715 9.0 kb Proximal (<10kb) 203
chr8:143,989,521–143,991,038 36.1 kb Distal (>10kb) Multiome 596
chr8:144,049,063–144,051,761 96.8 kb Distal (>10kb) Multiome 342
chr8:144,060,259–144,061,087 106.8 kb Distal (>10kb) Multiome 727
chr8:144,078,142–144,079,235 124.7 kb Distal (>10kb) Multiome 912
chr8:144,082,187–144,083,105 128.7 kb Distal (>10kb) Multiome HiCAR 763
chr8:144,094,454–144,095,491 141.0 kb Distal (>10kb) Multiome 798
chr8:144,103,485–144,105,242 150.4 kb Distal (>10kb) Multiome 1033
chr8:144,108,038–144,108,663 154.4 kb Distal (>10kb) Multiome 137
chr8:144,137,565–144,138,500 183.8 kb Distal (>10kb) Multiome 817
chr8:144,146,820–144,149,073 194.0 kb Distal (>10kb) Multiome 790
chr8:144,266,293–144,267,098 312.6 kb Distal (>10kb) Multiome 162
chr8:144,315,833–144,316,450 362.2 kb Distal (>10kb) Multiome HiCAR 396

Genome Browser

Genomic view of the PLEC locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr8:143,598,979 – 144,326,450
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq