PISD
phosphatidylserine decarboxylase | PSDC, dJ858B16.2
PISD — as a Regulated Gene

TFs regulating PISD 0 TFs

Transcription factors with Perturb-seq knockdown data for PISD. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PISD upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PISD

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PISD, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr22:31,362,564–31,363,231 299.4 kb Distal (>10kb) Multiome 164
chr22:31,399,166–31,400,036 262.7 kb Distal (>10kb) Multiome 913
chr22:31,489,111–31,490,354 172.4 kb Distal (>10kb) Multiome 819
chr22:31,496,060–31,496,942 165.7 kb Distal (>10kb) Multiome 769
chr22:31,630,284–31,631,283 31.4 kb Distal (>10kb) Multiome 643
chr22:31,661,894–31,662,649 21 bp At TSS Multiome 791
chr22:31,665,712–31,665,919 3.5 kb Proximal (<10kb) 256
chr22:31,676,686–31,677,164 14.7 kb Distal (>10kb) Multiome 294
chr22:31,749,600–31,750,546 87.9 kb Distal (>10kb) Multiome 850
chr22:31,752,977–31,754,325 91.7 kb Distal (>10kb) Multiome 854
chr22:31,943,414–31,945,454 282.2 kb Distal (>10kb) Multiome HiCAR 807
chr22:31,969,969–31,971,124 308.4 kb Distal (>10kb) Multiome HiCAR 601

Genome Browser

Genomic view of the PISD locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr22:31,352,564 – 31,981,124
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq