The product of this gene binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Peroxins (PEXs) are proteins that are essential for the assembly of functional peroxisomes. The peroxisome biogenesis disorders (PBDs) are a group of genetically heterogeneous autosomal recessive, lethal diseases characterized by multiple defects in peroxisome function. The peroxisomal biogenesis disorders are a heterogeneous group with at least 14 complementation groups and with more than 1 phenotype being observed in cases falling into particular complementation groups. Although the clinical features of PBD patients vary, cells from all PBD patients exhibit a defect in the import of one or more classes of peroxisomal matrix proteins into the organelle. Defects in this gene are a cause of neonatal adrenoleukodystrophy (NALD), a cause of Zellweger syndrome (ZWS) as well as may be a cause of infantile Refsum disease (IRD). Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Oct 2008]
Transcription factors with Perturb-seq knockdown data for PEX5. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PEX5 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PEX5, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr12:6,890,735–6,891,820 | 297.5 kb | Distal (>10kb) Multiome | 908 | |
| chr12:6,904,217–6,905,282 | 283.9 kb | Distal (>10kb) Multiome | 566 | |
| chr12:6,914,274–6,914,898 | 274.3 kb | Distal (>10kb) Multiome | 536 | |
| chr12:6,924,156–6,924,592 | 264.2 kb | Distal (>10kb) Multiome | 458 | |
| chr12:6,925,828–6,926,431 | 262.7 kb | Distal (>10kb) Multiome | 407 | |
| chr12:6,927,411–6,928,051 | 260.9 kb | Distal (>10kb) Multiome | 493 | |
| chr12:6,936,709–6,938,342 | 250.7 kb | Distal (>10kb) Multiome | 1008 | |
| chr12:6,942,356–6,945,492 | 244.5 kb | Distal (>10kb) Multiome | 1205 | |
| chr12:6,945,587–6,947,099 | 242.3 kb | Distal (>10kb) Multiome | 618 | |
| chr12:6,961,769–6,963,542 | 225.5 kb | Distal (>10kb) Multiome | 682 | |
| chr12:6,964,932–6,965,569 | 223.5 kb | Distal (>10kb) Multiome | 549 | |
| chr12:6,970,111–6,971,189 | 218.0 kb | Distal (>10kb) Multiome | 899 | |
| chr12:7,018,028–7,019,126 | 170.0 kb | Distal (>10kb) Multiome | 824 | |
| chr12:7,108,059–7,109,582 | 79.4 kb | Distal (>10kb) Multiome | 818 | |
| chr12:7,129,788–7,131,412 | 58.4 kb | Distal (>10kb) Multiome | 619 | |
| chr12:7,188,394–7,190,508 | 177 bp | At TSS Multiome | 769 | |
| chr12:7,439,804–7,440,461 | 251.4 kb | Distal (>10kb) Multiome | 361 | |
| chr12:7,638,028–7,638,994 | 450.0 kb | Distal (>10kb) Multiome HiCAR | 360 | |
| chr12:7,639,859–7,640,636 | 451.7 kb | Distal (>10kb) Multiome HiCAR | 28 |
Genomic view of the PEX5 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.