PEX5
peroxisomal biogenesis factor 5 | PTS1R, PXR1

The product of this gene binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Peroxins (PEXs) are proteins that are essential for the assembly of functional peroxisomes. The peroxisome biogenesis disorders (PBDs) are a group of genetically heterogeneous autosomal recessive, lethal diseases characterized by multiple defects in peroxisome function. The peroxisomal biogenesis disorders are a heterogeneous group with at least 14 complementation groups and with more than 1 phenotype being observed in cases falling into particular complementation groups. Although the clinical features of PBD patients vary, cells from all PBD patients exhibit a defect in the import of one or more classes of peroxisomal matrix proteins into the organelle. Defects in this gene are a cause of neonatal adrenoleukodystrophy (NALD), a cause of Zellweger syndrome (ZWS) as well as may be a cause of infantile Refsum disease (IRD). Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Oct 2008]

Developmental clusters: GC2
Biological processes 49 terms
Golgi apparatus (GO:0005794)cellular response to reactive oxygen species (GO:0034614)cytoplasm (GO:0005737)cytosol (GO:0005829)cytosol (GO:0005829)cytosol (GO:0005829)cytosol (GO:0005829)cytosol (GO:0005829)enzyme binding (GO:0019899)membrane (GO:0016020)negative regulation of protein-containing complex assembly (GO:0031333)peroxisomal matrix (GO:0005782)peroxisomal matrix (GO:0005782)peroxisomal matrix (GO:0005782)peroxisomal matrix (GO:0005782)peroxisomal matrix (GO:0005782)peroxisomal membrane (GO:0005778)peroxisomal membrane (GO:0005778)peroxisomal membrane (GO:0005778)peroxisome (GO:0005777)peroxisome matrix targeting signal-1 binding (GO:0005052)peroxisome matrix targeting signal-1 binding (GO:0005052)peroxisome matrix targeting signal-1 binding (GO:0005052)peroxisome matrix targeting signal-1 binding (GO:0005052)peroxisome membrane targeting sequence binding (GO:0033328)peroxisome targeting sequence binding (GO:0000268)pexophagy (GO:0000425)protein binding (GO:0005515)protein carrier activity (GO:0140597)protein carrier activity (GO:0140597)protein import into peroxisome matrix (GO:0016558)protein import into peroxisome matrix (GO:0016558)protein import into peroxisome matrix (GO:0016558)protein import into peroxisome matrix (GO:0016558)protein import into peroxisome matrix, docking (GO:0016560)protein import into peroxisome matrix, docking (GO:0016560)protein import into peroxisome matrix, receptor recycling (GO:0016562)protein import into peroxisome matrix, substrate release (GO:0044721)protein import into peroxisome matrix, substrate release (GO:0044721)protein import into peroxisome matrix, substrate release (GO:0044721)protein import into peroxisome matrix, translocation (GO:0016561)protein import into peroxisome matrix, translocation (GO:0016561)protein import into peroxisome membrane (GO:0045046)protein targeting to peroxisome (GO:0006625)protein targeting to peroxisome (GO:0006625)protein tetramerization (GO:0051262)protein-containing complex (GO:0032991)protein-macromolecule adaptor activity (GO:0030674)small GTPase binding (GO:0031267)
Expression (TPM)
PEX5 — as a Regulated Gene

TFs regulating PEX5 0 TFs

Transcription factors with Perturb-seq knockdown data for PEX5. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PEX5 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PEX5

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PEX5, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr12:6,890,735–6,891,820 297.5 kb Distal (>10kb) Multiome 908
chr12:6,904,217–6,905,282 283.9 kb Distal (>10kb) Multiome 566
chr12:6,914,274–6,914,898 274.3 kb Distal (>10kb) Multiome 536
chr12:6,924,156–6,924,592 264.2 kb Distal (>10kb) Multiome 458
chr12:6,925,828–6,926,431 262.7 kb Distal (>10kb) Multiome 407
chr12:6,927,411–6,928,051 260.9 kb Distal (>10kb) Multiome 493
chr12:6,936,709–6,938,342 250.7 kb Distal (>10kb) Multiome 1008
chr12:6,942,356–6,945,492 244.5 kb Distal (>10kb) Multiome 1205
chr12:6,945,587–6,947,099 242.3 kb Distal (>10kb) Multiome 618
chr12:6,961,769–6,963,542 225.5 kb Distal (>10kb) Multiome 682
chr12:6,964,932–6,965,569 223.5 kb Distal (>10kb) Multiome 549
chr12:6,970,111–6,971,189 218.0 kb Distal (>10kb) Multiome 899
chr12:7,018,028–7,019,126 170.0 kb Distal (>10kb) Multiome 824
chr12:7,108,059–7,109,582 79.4 kb Distal (>10kb) Multiome 818
chr12:7,129,788–7,131,412 58.4 kb Distal (>10kb) Multiome 619
chr12:7,188,394–7,190,508 177 bp At TSS Multiome 769
chr12:7,439,804–7,440,461 251.4 kb Distal (>10kb) Multiome 361
chr12:7,638,028–7,638,994 450.0 kb Distal (>10kb) Multiome HiCAR 360
chr12:7,639,859–7,640,636 451.7 kb Distal (>10kb) Multiome HiCAR 28

Genome Browser

Genomic view of the PEX5 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr12:6,880,735 – 7,650,636
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq