This gene encodes a deadenylase that functions as the catalytic subunit of the polyadenylate binding protein dependent poly(A) nuclease complex. The encoded protein is a magnesium dependent 3' to 5' exoribonuclease that is involved in the degradation of cytoplasmic mRNAs. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Oct 2009]
Transcription factors with Perturb-seq knockdown data for PAN2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PAN2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PAN2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr12:56,041,220–56,042,537 | 292.2 kb | Distal (>10kb) Multiome | 1035 | |
| chr12:56,078,964–56,081,015 | 254.7 kb | Distal (>10kb) Multiome | 1032 | |
| chr12:56,103,918–56,105,302 | 229.6 kb | Distal (>10kb) Multiome | 977 | |
| chr12:56,115,844–56,117,060 | 217.5 kb | Distal (>10kb) Multiome | 958 | |
| chr12:56,117,641–56,119,301 | 215.8 kb | Distal (>10kb) Multiome | 1052 | |
| chr12:56,126,181–56,126,640 | 207.7 kb | Distal (>10kb) Multiome | 671 | |
| chr12:56,127,552–56,129,104 | 205.9 kb | Distal (>10kb) Multiome | 800 | |
| chr12:56,151,724–56,153,003 | 181.5 kb | Distal (>10kb) Multiome | 830 | |
| chr12:56,157,307–56,159,499 | 175.8 kb | Distal (>10kb) Multiome | 1008 | |
| chr12:56,188,836–56,190,865 | 144.4 kb | Distal (>10kb) Multiome | 954 | |
| chr12:56,221,094–56,222,691 | 112.0 kb | Distal (>10kb) Multiome | 884 | |
| chr12:56,222,996–56,223,487 | 110.8 kb | Distal (>10kb) Multiome | 38 | |
| chr12:56,223,843–56,224,800 | 109.7 kb | Distal (>10kb) Multiome | 765 | |
| chr12:56,257,471–56,258,774 | 75.5 kb | Distal (>10kb) Multiome | 710 | |
| chr12:56,266,608–56,267,683 | 66.9 kb | Distal (>10kb) Multiome | 857 | |
| chr12:56,299,744–56,300,865 | 33.6 kb | Distal (>10kb) Multiome HiCAR | 923 | |
| chr12:56,315,380–56,316,674 | 17.8 kb | Distal (>10kb) Multiome HiCAR | 934 | |
| chr12:56,333,366–56,334,588 | 2 bp | At TSS Multiome | 853 | |
| chr12:56,338,464–56,338,874 | 4.5 kb | Proximal (<10kb) | 133 | |
| chr12:56,359,808–56,360,881 | 26.3 kb | Distal (>10kb) Multiome HiCAR | 860 | |
| chr12:56,448,848–56,449,756 | 115.3 kb | Distal (>10kb) Multiome | 920 | |
| chr12:56,468,239–56,468,840 | 134.6 kb | Distal (>10kb) Multiome HiCAR | 907 | |
| chr12:56,487,633–56,488,590 | 154.3 kb | Distal (>10kb) Multiome | 784 | |
| chr12:56,629,725–56,630,674 | 296.4 kb | Distal (>10kb) Multiome | 759 |
Genomic view of the PAN2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.