Poly(A)-binding proteins (PABPs) bind to the poly(A) tail present at the 3-prime ends of most eukaryotic mRNAs. PABPC4 or IPABP (inducible PABP) was isolated as an activation-induced T-cell mRNA encoding a protein. Activation of T cells increased PABPC4 mRNA levels in T cells approximately 5-fold. PABPC4 contains 4 RNA-binding domains and proline-rich C terminus. PABPC4 is localized primarily to the cytoplasm. It is suggested that PABPC4 might be necessary for regulation of stability of labile mRNA species in activated T cells. PABPC4 was also identified as an antigen, APP1 (activated-platelet protein-1), expressed on thrombin-activated rabbit platelets. PABPC4 may also be involved in the regulation of protein translation in platelets and megakaryocytes or may participate in the binding or stabilization of polyadenylates in platelet dense granules. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. This protein has also been found to interact with coronavirus nucleocapsid proteins and is thought to inhibit coronavirus replication. [provided by RefSeq, Nov 2021]
Transcription factors with Perturb-seq knockdown data for PABPC4. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PABPC4 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PABPC4, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:39,276,096–39,276,654 | 300.4 kb | Distal (>10kb) Multiome | 93 | |
| chr1:39,394,478–39,395,744 | 181.1 kb | Distal (>10kb) Multiome | 295 | |
| chr1:39,408,101–39,409,740 | 167.9 kb | Distal (>10kb) Multiome | 760 | |
| chr1:39,490,877–39,492,177 | 85.2 kb | Distal (>10kb) Multiome | 495 | |
| chr1:39,575,798–39,576,184 | 7.9 kb | Proximal (<10kb) | 374 | |
| chr1:39,576,409–39,577,232 | 97 bp | At TSS Multiome | 683 | |
| chr1:39,609,639–39,610,339 | 33.1 kb | Distal (>10kb) Multiome | 387 | |
| chr1:39,632,749–39,633,322 | 56.3 kb | Distal (>10kb) Multiome | 174 | |
| chr1:39,639,353–39,640,336 | 63.0 kb | Distal (>10kb) Multiome | 503 | |
| chr1:39,691,164–39,691,639 | 114.7 kb | Distal (>10kb) Multiome | 333 | |
| chr1:39,701,474–39,702,144 | 125.1 kb | Distal (>10kb) Multiome | 352 | |
| chr1:39,738,639–39,739,177 | 162.1 kb | Distal (>10kb) Multiome | 534 | |
| chr1:39,788,434–39,789,609 | 212.3 kb | Distal (>10kb) Multiome | 548 |
Genomic view of the PABPC4 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.