PABPC4
poly(A) binding protein cytoplasmic 4 | APP-1, iPABP

Poly(A)-binding proteins (PABPs) bind to the poly(A) tail present at the 3-prime ends of most eukaryotic mRNAs. PABPC4 or IPABP (inducible PABP) was isolated as an activation-induced T-cell mRNA encoding a protein. Activation of T cells increased PABPC4 mRNA levels in T cells approximately 5-fold. PABPC4 contains 4 RNA-binding domains and proline-rich C terminus. PABPC4 is localized primarily to the cytoplasm. It is suggested that PABPC4 might be necessary for regulation of stability of labile mRNA species in activated T cells. PABPC4 was also identified as an antigen, APP1 (activated-platelet protein-1), expressed on thrombin-activated rabbit platelets. PABPC4 may also be involved in the regulation of protein translation in platelets and megakaryocytes or may participate in the binding or stabilization of polyadenylates in platelet dense granules. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. This protein has also been found to interact with coronavirus nucleocapsid proteins and is thought to inhibit coronavirus replication. [provided by RefSeq, Nov 2021]

Member of: DE-1 Developmental clusters: GC3
Biological processes 27 terms
Expression (TPM)
PABPC4 — as a Regulated Gene

TFs regulating PABPC4 0 TFs

Transcription factors with Perturb-seq knockdown data for PABPC4. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PABPC4 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PABPC4

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PABPC4, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr1:39,276,096–39,276,654 300.4 kb Distal (>10kb) Multiome 93
chr1:39,394,478–39,395,744 181.1 kb Distal (>10kb) Multiome 295
chr1:39,408,101–39,409,740 167.9 kb Distal (>10kb) Multiome 760
chr1:39,490,877–39,492,177 85.2 kb Distal (>10kb) Multiome 495
chr1:39,575,798–39,576,184 7.9 kb Proximal (<10kb) 374
chr1:39,576,409–39,577,232 97 bp At TSS Multiome 683
chr1:39,609,639–39,610,339 33.1 kb Distal (>10kb) Multiome 387
chr1:39,632,749–39,633,322 56.3 kb Distal (>10kb) Multiome 174
chr1:39,639,353–39,640,336 63.0 kb Distal (>10kb) Multiome 503
chr1:39,691,164–39,691,639 114.7 kb Distal (>10kb) Multiome 333
chr1:39,701,474–39,702,144 125.1 kb Distal (>10kb) Multiome 352
chr1:39,738,639–39,739,177 162.1 kb Distal (>10kb) Multiome 534
chr1:39,788,434–39,789,609 212.3 kb Distal (>10kb) Multiome 548

Genome Browser

Genomic view of the PABPC4 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr1:39,266,096 – 39,799,609
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq