Predicted to contribute to stretch-activated, monoatomic cation-selective, calcium channel activity. Predicted to be involved in calcium ion import across plasma membrane. Located in plasma membrane. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for NALF1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = NALF1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of NALF1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr13:107,678,211–107,679,135 | 188.6 kb | Distal (>10kb) Multiome | 143 | |
| chr13:107,715,476–107,717,069 | 151.1 kb | Distal (>10kb) Multiome | 129 | |
| chr13:107,864,651–107,864,818 | 2.7 kb | Proximal (<10kb) | 155 | |
| chr13:107,865,631–107,868,907 | 85 bp | At TSS Multiome | 550 | |
| chr13:107,869,955–107,870,386 | 2.5 kb | Proximal (<10kb) | 24 |
Genomic view of the NALF1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.