Located in cytosol. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for LRRC1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LRRC1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LRRC1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr6:53,495,283–53,496,107 | 299.4 kb | Distal (>10kb) Multiome | 93 | |
| chr6:53,542,102–53,543,184 | 252.5 kb | Distal (>10kb) Multiome | 162 | |
| chr6:53,543,445–53,545,523 | 250.1 kb | Distal (>10kb) Multiome | 1007 | |
| chr6:53,547,468–53,548,755 | 247.0 kb | Distal (>10kb) Multiome | 1074 | |
| chr6:53,651,237–53,652,543 | 143.0 kb | Distal (>10kb) Multiome | 1006 | |
| chr6:53,665,495–53,665,968 | 129.3 kb | Distal (>10kb) Multiome | 132 | |
| chr6:53,793,294–53,796,553 | 159 bp | At TSS Multiome | 1032 | |
| chr6:53,810,805–53,812,249 | 16.3 kb | Distal (>10kb) Multiome | 360 |
Genomic view of the LRRC1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.