Transcription factors with Perturb-seq knockdown data for LINC02387. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC02387 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC02387, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr12:31,362,120–31,363,072 | 6.2 kb | Proximal (<10kb) | 485 | |
| chr12:31,368,619–31,369,388 | at TSS | At TSS | 173 | |
| chr12:31,369,679–31,370,193 | 378 bp | At TSS | 180 | |
| chr12:31,370,717–31,371,181 | 1.4 kb | Proximal (<10kb) | 293 |
Genomic view of the LINC02387 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.