There are approximately 40 known eukaryotic LIM proteins, so named for the LIM domains they contain. LIM domains are highly conserved cysteine-rich structures containing 2 zinc fingers. Although zinc fingers usually function by binding to DNA or RNA, the LIM motif probably mediates protein-protein interactions. LIM kinase-1 and LIM kinase-2 belong to a small subfamily with a unique combination of 2 N-terminal LIM motifs and a C-terminal protein kinase domain. LIMK1 is a serine/threonine kinase that regulates actin polymerization via phosphorylation and inactivation of the actin binding factor cofilin. This protein is ubiquitously expressed during development and plays a role in many cellular processes associated with cytoskeletal structure. This protein also stimulates axon growth and may play a role in brain development. LIMK1 hemizygosity is implicated in the impaired visuospatial constructive cognition of Williams syndrome. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Feb 2011]
Transcription factors with Perturb-seq knockdown data for LIMK1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LIMK1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LIMK1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:73,831,659–73,832,518 | 251.7 kb | Distal (>10kb) Multiome | 447 | |
| chr7:73,841,730–73,843,136 | 241.5 kb | Distal (>10kb) Multiome | 575 | |
| chr7:73,885,944–73,886,823 | 197.6 kb | Distal (>10kb) Multiome | 480 | |
| chr7:74,026,698–74,027,309 | 57.0 kb | Distal (>10kb) Multiome | 294 | |
| chr7:74,067,853–74,068,319 | 16.0 kb | Distal (>10kb) Multiome | 359 | |
| chr7:74,082,928–74,085,020 | 283 bp | At TSS Multiome | 602 | |
| chr7:74,094,257–74,095,257 | 10.9 kb | Distal (>10kb) Multiome | 409 | |
| chr7:74,173,712–74,175,040 | 90.3 kb | Distal (>10kb) Multiome HiCAR | 927 | |
| chr7:74,206,458–74,207,053 | 122.8 kb | Distal (>10kb) Multiome HiCAR | 436 | |
| chr7:74,253,979–74,254,920 | 170.5 kb | Distal (>10kb) Multiome | 943 | |
| chr7:74,269,798–74,270,278 | 186.0 kb | Distal (>10kb) Multiome | 527 | |
| chr7:74,282,776–74,283,619 | 199.1 kb | Distal (>10kb) Multiome | 157 | |
| chr7:74,284,675–74,285,215 | 201.0 kb | Distal (>10kb) Multiome | 204 | |
| chr7:74,288,851–74,289,933 | 205.4 kb | Distal (>10kb) Multiome | 529 | |
| chr7:74,371,455–74,372,279 | 287.9 kb | Distal (>10kb) Multiome | 234 |
Genomic view of the LIMK1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.