LIMK1
LIM domain kinase 1 | LIMK

There are approximately 40 known eukaryotic LIM proteins, so named for the LIM domains they contain. LIM domains are highly conserved cysteine-rich structures containing 2 zinc fingers. Although zinc fingers usually function by binding to DNA or RNA, the LIM motif probably mediates protein-protein interactions. LIM kinase-1 and LIM kinase-2 belong to a small subfamily with a unique combination of 2 N-terminal LIM motifs and a C-terminal protein kinase domain. LIMK1 is a serine/threonine kinase that regulates actin polymerization via phosphorylation and inactivation of the actin binding factor cofilin. This protein is ubiquitously expressed during development and plays a role in many cellular processes associated with cytoskeletal structure. This protein also stimulates axon growth and may play a role in brain development. LIMK1 hemizygosity is implicated in the impaired visuospatial constructive cognition of Williams syndrome. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Feb 2011]

Member of: DE-10
Biological processes 45 terms
ATP binding (GO:0005524)Fc-gamma receptor signaling pathway involved in phagocytosis (GO:0038096)Rho protein signal transduction (GO:0007266)actin cytoskeleton organization (GO:0030036)actin cytoskeleton organization (GO:0030036)cell junction (GO:0030054)cytoplasm (GO:0005737)cytoplasm (GO:0005737)cytoplasm (GO:0005737)cytoskeleton (GO:0005856)cytosol (GO:0005829)cytosol (GO:0005829)focal adhesion (GO:0005925)glutamatergic synapse (GO:0098978)glutamatergic synapse (GO:0098978)heat shock protein binding (GO:0031072)lamellipodium (GO:0030027)lamellipodium (GO:0030027)membrane (GO:0016020)nervous system development (GO:0007399)neuron projection (GO:0043005)neuron projection (GO:0043005)neuron projection (GO:0043005)nuclear speck (GO:0016607)nucleus (GO:0005634)nucleus (GO:0005634)positive regulation of actin filament bundle assembly (GO:0032233)positive regulation of axon extension (GO:0045773)positive regulation of stress fiber assembly (GO:0051496)postsynapse (GO:0098794)postsynapse (GO:0098794)protein binding (GO:0005515)protein kinase activity (GO:0004672)protein kinase activity (GO:0004672)protein phosphorylation (GO:0006468)protein phosphorylation (GO:0006468)protein phosphorylation (GO:0006468)protein serine kinase activity (GO:0106310)protein serine/threonine kinase activity (GO:0004674)protein serine/threonine kinase activity (GO:0004674)protein serine/threonine kinase activity (GO:0004674)protein serine/threonine kinase activity (GO:0004674)signal transduction (GO:0007165)ubiquitin ligase inhibitor activity (GO:1990948)ubiquitin protein ligase binding (GO:0031625)
Expression (TPM)
LIMK1 — as a Regulated Gene

TFs regulating LIMK1 0 TFs

Transcription factors with Perturb-seq knockdown data for LIMK1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LIMK1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to LIMK1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LIMK1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr7:73,831,659–73,832,518 251.7 kb Distal (>10kb) Multiome 447
chr7:73,841,730–73,843,136 241.5 kb Distal (>10kb) Multiome 575
chr7:73,885,944–73,886,823 197.6 kb Distal (>10kb) Multiome 480
chr7:74,026,698–74,027,309 57.0 kb Distal (>10kb) Multiome 294
chr7:74,067,853–74,068,319 16.0 kb Distal (>10kb) Multiome 359
chr7:74,082,928–74,085,020 283 bp At TSS Multiome 602
chr7:74,094,257–74,095,257 10.9 kb Distal (>10kb) Multiome 409
chr7:74,173,712–74,175,040 90.3 kb Distal (>10kb) Multiome HiCAR 927
chr7:74,206,458–74,207,053 122.8 kb Distal (>10kb) Multiome HiCAR 436
chr7:74,253,979–74,254,920 170.5 kb Distal (>10kb) Multiome 943
chr7:74,269,798–74,270,278 186.0 kb Distal (>10kb) Multiome 527
chr7:74,282,776–74,283,619 199.1 kb Distal (>10kb) Multiome 157
chr7:74,284,675–74,285,215 201.0 kb Distal (>10kb) Multiome 204
chr7:74,288,851–74,289,933 205.4 kb Distal (>10kb) Multiome 529
chr7:74,371,455–74,372,279 287.9 kb Distal (>10kb) Multiome 234

Genome Browser

Genomic view of the LIMK1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr7:73,821,659 – 74,382,279
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq