KLC1
kinesin light chain 1 | KLC, KNS2A, hKLC1B, hKLC1G, hKLC1J, hKLC1N, hKLC1P, hKLC1R, hKLC1S, KNS2

Conventional kinesin is a tetrameric molecule composed of two heavy chains and two light chains, and transports various cargos along microtubules toward their plus ends. The heavy chains provide the motor activity, while the light chains bind to various cargos. This gene encodes a member of the kinesin light chain family. It associates with kinesin heavy chain through an N-terminal domain, and six tetratricopeptide repeat (TPR) motifs are thought to be involved in binding of cargos such as vesicles, mitochondria, and the Golgi complex. Thus, kinesin light chains function as adapter molecules and not motors per se. Although previously named "kinesin 2", this gene is not a member of the kinesin-2 / kinesin heavy chain subfamily of kinesin motor proteins. Extensive alternative splicing produces isoforms with different C-termini that are proposed to bind to different cargos; however, the full-length nature and/or biological validity of most of these variants have not been determined. [provided by RefSeq, Jul 2008]

Member of: DE-4 DE-4.2
Biological processes 16 terms
Expression (TPM)
KLC1 — as a Regulated Gene

TFs regulating KLC1 0 TFs

Transcription factors with Perturb-seq knockdown data for KLC1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = KLC1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to KLC1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of KLC1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr14:103,333,053–103,335,386 295.1 kb Distal (>10kb) Multiome 1004
chr14:103,384,755–103,386,021 243.9 kb Distal (>10kb) Multiome 863
chr14:103,456,058–103,456,564 172.9 kb Distal (>10kb) Multiome 49
chr14:103,518,427–103,519,043 110.4 kb Distal (>10kb) Multiome 404
chr14:103,520,443–103,523,552 106.3 kb Distal (>10kb) Multiome 756
chr14:103,528,671–103,529,619 100.1 kb Distal (>10kb) Multiome 726
chr14:103,561,982–103,563,356 66.4 kb Distal (>10kb) Multiome 781
chr14:103,628,110–103,630,126 83 bp At TSS Multiome 909
chr14:103,715,029–103,716,504 86.4 kb Distal (>10kb) Multiome 709
chr14:103,846,809–103,848,686 218.5 kb Distal (>10kb) Multiome 711
chr14:103,855,145–103,855,758 226.3 kb Distal (>10kb) Multiome 418
chr14:103,871,719–103,872,659 242.9 kb Distal (>10kb) Multiome 313
chr14:103,910,266–103,910,793 281.2 kb Distal (>10kb) Multiome 374
chr14:103,921,195–103,921,889 292.4 kb Distal (>10kb) Multiome 874

Genome Browser

Genomic view of the KLC1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr14:103,323,053 – 103,931,889
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq