Retention of resident soluble proteins in the lumen of the endoplasmic reticulum (ER) is achieved in both yeast and animal cells by their continual retrieval from the cis-Golgi, or a pre-Golgi compartment. Sorting of these proteins is dependent on a C-terminal tetrapeptide signal, usually lys-asp-glu-leu (KDEL) in animal cells, and his-asp-glu-leu (HDEL) in S. cerevisiae. This process is mediated by a receptor that recognizes, and binds the tetrapeptide-containing protein, and returns it to the ER. In yeast, the sorting receptor encoded by a single gene, ERD2, is a seven-transmembrane protein. Unlike yeast, several human homologs of the ERD2 gene, constituting the KDEL receptor gene family, have been described. KDELR2 was the second member of the family to be identified, and it encodes a protein which is 83% identical to the KDELR1 gene product. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for KDELR2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = KDELR2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of KDELR2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:6,271,933–6,273,059 | 211.5 kb | Distal (>10kb) Multiome | 582 | |
| chr7:6,348,284–6,349,527 | 135.2 kb | Distal (>10kb) Multiome | 787 | |
| chr7:6,374,107–6,375,074 | 109.8 kb | Distal (>10kb) Multiome | 778 | |
| chr7:6,447,046–6,448,661 | 36.2 kb | Distal (>10kb) Multiome | 944 | |
| chr7:6,483,337–6,484,560 | 23 bp | At TSS Multiome | 748 | |
| chr7:6,502,814–6,505,187 | 19.9 kb | Distal (>10kb) Multiome | 573 | |
| chr7:6,516,399–6,516,954 | 32.4 kb | Distal (>10kb) Multiome | 245 | |
| chr7:6,526,260–6,527,132 | 42.5 kb | Distal (>10kb) Multiome | 313 | |
| chr7:6,530,620–6,531,774 | 47.0 kb | Distal (>10kb) Multiome | 296 | |
| chr7:6,536,237–6,537,265 | 52.7 kb | Distal (>10kb) Multiome | 223 | |
| chr7:6,577,282–6,577,787 | 93.3 kb | Distal (>10kb) Multiome | 840 | |
| chr7:6,589,551–6,590,781 | 105.8 kb | Distal (>10kb) Multiome | 802 | |
| chr7:6,614,875–6,616,376 | 131.3 kb | Distal (>10kb) Multiome | 610 | |
| chr7:6,640,237–6,641,084 | 156.4 kb | Distal (>10kb) Multiome | 238 | |
| chr7:6,663,809–6,664,686 | 179.9 kb | Distal (>10kb) Multiome | 232 | |
| chr7:6,706,296–6,707,347 | 222.8 kb | Distal (>10kb) Multiome | 718 | |
| chr7:6,729,225–6,730,453 | 245.5 kb | Distal (>10kb) Multiome | 755 |
Genomic view of the KDELR2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.