KDELR2
KDEL endoplasmic reticulum protein retention receptor 2 | ELP-1, ERD2.2

Retention of resident soluble proteins in the lumen of the endoplasmic reticulum (ER) is achieved in both yeast and animal cells by their continual retrieval from the cis-Golgi, or a pre-Golgi compartment. Sorting of these proteins is dependent on a C-terminal tetrapeptide signal, usually lys-asp-glu-leu (KDEL) in animal cells, and his-asp-glu-leu (HDEL) in S. cerevisiae. This process is mediated by a receptor that recognizes, and binds the tetrapeptide-containing protein, and returns it to the ER. In yeast, the sorting receptor encoded by a single gene, ERD2, is a seven-transmembrane protein. Unlike yeast, several human homologs of the ERD2 gene, constituting the KDEL receptor gene family, have been described. KDELR2 was the second member of the family to be identified, and it encodes a protein which is 83% identical to the KDELR1 gene product. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2008]

Member of: DE-1 DE-1.16
Biological processes 22 terms
Expression (TPM)
KDELR2 — as a Regulated Gene

TFs regulating KDELR2 0 TFs

Transcription factors with Perturb-seq knockdown data for KDELR2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = KDELR2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to KDELR2

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of KDELR2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr7:6,271,933–6,273,059 211.5 kb Distal (>10kb) Multiome 582
chr7:6,348,284–6,349,527 135.2 kb Distal (>10kb) Multiome 787
chr7:6,374,107–6,375,074 109.8 kb Distal (>10kb) Multiome 778
chr7:6,447,046–6,448,661 36.2 kb Distal (>10kb) Multiome 944
chr7:6,483,337–6,484,560 23 bp At TSS Multiome 748
chr7:6,502,814–6,505,187 19.9 kb Distal (>10kb) Multiome 573
chr7:6,516,399–6,516,954 32.4 kb Distal (>10kb) Multiome 245
chr7:6,526,260–6,527,132 42.5 kb Distal (>10kb) Multiome 313
chr7:6,530,620–6,531,774 47.0 kb Distal (>10kb) Multiome 296
chr7:6,536,237–6,537,265 52.7 kb Distal (>10kb) Multiome 223
chr7:6,577,282–6,577,787 93.3 kb Distal (>10kb) Multiome 840
chr7:6,589,551–6,590,781 105.8 kb Distal (>10kb) Multiome 802
chr7:6,614,875–6,616,376 131.3 kb Distal (>10kb) Multiome 610
chr7:6,640,237–6,641,084 156.4 kb Distal (>10kb) Multiome 238
chr7:6,663,809–6,664,686 179.9 kb Distal (>10kb) Multiome 232
chr7:6,706,296–6,707,347 222.8 kb Distal (>10kb) Multiome 718
chr7:6,729,225–6,730,453 245.5 kb Distal (>10kb) Multiome 755

Genome Browser

Genomic view of the KDELR2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr7:6,261,933 – 6,740,453
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq