Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. This gene encodes a member of the potassium channel, voltage-gated, subfamily F. This gene is intronless and expressed in all tissues tested, including the heart, skeletal muscle, brain, kidney, and pancreas. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for KCNF1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = KCNF1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of KCNF1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:10,689,600–10,690,429 | 221.9 kb | Distal (>10kb) Multiome | 876 | |
| chr2:10,721,088–10,722,120 | 190.3 kb | Distal (>10kb) Multiome | 294 | |
| chr2:10,812,144–10,813,386 | 99.1 kb | Distal (>10kb) Multiome | 759 | |
| chr2:10,832,144–10,832,980 | 79.4 kb | Distal (>10kb) Multiome HiCAR | 442 | |
| chr2:10,835,087–10,835,827 | 76.5 kb | Distal (>10kb) Multiome HiCAR | 476 | |
| chr2:10,849,882–10,851,025 | 61.6 kb | Distal (>10kb) Multiome | 128 | |
| chr2:10,873,608–10,874,413 | 37.9 kb | Distal (>10kb) Multiome | 91 | |
| chr2:10,909,746–10,910,391 | 1.9 kb | Proximal (<10kb) Multiome | 127 | |
| chr2:10,910,935–10,912,648 | 354 bp | At TSS Multiome | 421 | |
| chr2:10,914,357–10,914,531 | 2.4 kb | Proximal (<10kb) | 98 | |
| chr2:11,129,508–11,130,490 | 218.1 kb | Distal (>10kb) Multiome HiCAR | 660 | |
| chr2:11,132,494–11,133,872 | 221.0 kb | Distal (>10kb) Multiome | 774 | |
| chr2:11,154,551–11,156,096 | 243.4 kb | Distal (>10kb) Multiome | 845 |
Genomic view of the KCNF1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.