In mammalian cells, 2 broad groups of centromere-interacting proteins have been described: constitutively binding centromere proteins and 'passenger,' or transiently interacting, proteins (reviewed by Choo, 1997). The constitutive proteins include CENPA (centromere protein A; MIM 117139), CENPB (MIM 117140), CENPC1 (MIM 117141), and CENPD (MIM 117142). The term 'passenger proteins' encompasses a broad collection of proteins that localize to the centromere during specific stages of the cell cycle (Earnshaw and Mackay, 1994 [PubMed 8088460]). These include CENPE (MIM 117143); MCAK (MIM 604538); KID (MIM 603213); cytoplasmic dynein (e.g., MIM 600112); CliPs (e.g., MIM 179838); and CENPF/mitosin (MIM 600236). The inner centromere proteins (INCENPs) (Earnshaw and Cooke, 1991 [PubMed 1860899]), the initial members of the passenger protein group, display a broad localization along chromosomes in the early stages of mitosis but gradually become concentrated at centromeres as the cell cycle progresses into mid-metaphase. During telophase, the proteins are located within the midbody in the intercellular bridge, where they are discarded after cytokinesis (Cutts et al., 1999 [PubMed 10369859]).[supplied by OMIM, Mar 2008]
Transcription factors with Perturb-seq knockdown data for INCENP. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = INCENP upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of INCENP, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr11:61,827,285–61,829,337 | 296.0 kb | Distal (>10kb) Multiome | 728 | |
| chr11:61,871,019–61,871,621 | 252.7 kb | Distal (>10kb) Multiome HiCAR | 443 | |
| chr11:61,890,974–61,892,214 | 232.3 kb | Distal (>10kb) Multiome HiCAR | 619 | |
| chr11:61,898,986–61,899,424 | 224.7 kb | Distal (>10kb) Multiome | 498 | |
| chr11:61,917,152–61,917,983 | 206.4 kb | Distal (>10kb) Multiome | 465 | |
| chr11:61,955,466–61,956,219 | 168.2 kb | Distal (>10kb) Multiome | 217 | |
| chr11:61,966,654–61,968,718 | 156.3 kb | Distal (>10kb) Multiome | 939 | |
| chr11:61,971,541–61,972,360 | 152.0 kb | Distal (>10kb) Multiome | 877 | |
| chr11:62,123,661–62,124,441 | 98 bp | At TSS Multiome | 619 | |
| chr11:62,337,140–62,338,142 | 213.5 kb | Distal (>10kb) Multiome | 611 | |
| chr11:62,382,190–62,383,008 | 258.6 kb | Distal (>10kb) Multiome | 36 |
Genomic view of the INCENP locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.