Transcription factors with Perturb-seq knockdown data for HHIP-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = HHIP-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of HHIP-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr4:144,645,010–144,647,534 | at TSS | At TSS | 464 | |
| chr4:144,647,743–144,648,344 | 1.8 kb | Proximal (<10kb) | 75 | |
| chr4:144,649,624–144,650,249 | 3.6 kb | Proximal (<10kb) | 181 | |
| chr4:144,653,887–144,654,485 | 7.9 kb | Proximal (<10kb) | 27 |
Genomic view of the HHIP-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.