GPX1
glutathione peroxidase 1

The protein encoded by this gene belongs to the glutathione peroxidase family, members of which catalyze the reduction of organic hydroperoxides and hydrogen peroxide (H2O2) by glutathione, and thereby protect cells against oxidative damage. Other studies indicate that H2O2 is also essential for growth-factor mediated signal transduction, mitochondrial function, and maintenance of thiol redox-balance; therefore, by limiting H2O2 accumulation, glutathione peroxidases are also involved in modulating these processes. Several isozymes of this gene family exist in vertebrates, which vary in cellular location and substrate specificity. This isozyme is the most abundant, is ubiquitously expressed and localized in the cytoplasm, and whose preferred substrate is hydrogen peroxide. It is also a selenoprotein, containing the rare amino acid selenocysteine (Sec) at its active site. Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. This gene contains an in-frame GCG trinucleotide repeat in the coding region, and three alleles with 4, 5 or 6 repeats have been found in the human population. The allele with 4 GCG repeats has been significantly associated with breast cancer risk in premenopausal women. Alternatively spliced transcript variants have been found for this gene. Pseudogenes of this locus have been identified on chromosomes X and 21. [provided by RefSeq, Aug 2017]

Member of: DE-1 DE-1.29
Biological processes 54 terms
Lewy body (GO:0097413)SH3 domain binding (GO:0017124)UV protection (GO:0009650)arachidonate metabolic process (GO:0019369)arachidonate metabolic process (GO:0019369)cell redox homeostasis (GO:0045454)cellular oxidant detoxification (GO:0098869)cellular response to glucose stimulus (GO:0071333)cellular response to oxidative stress (GO:0034599)cellular response to oxidative stress (GO:0034599)cellular response to oxidative stress (GO:0034599)cytoplasm (GO:0005737)cytoplasm (GO:0005737)cytosol (GO:0005829)cytosol (GO:0005829)cytosol (GO:0005829)cytosol (GO:0005829)epigenetic regulation of gene expression (GO:0040029)glutathione metabolic process (GO:0006749)glutathione metabolic process (GO:0006749)glutathione peroxidase activity (GO:0004602)glutathione peroxidase activity (GO:0004602)glutathione peroxidase activity (GO:0004602)heart contraction (GO:0060047)hydrogen peroxide catabolic process (GO:0042744)hydrogen peroxide catabolic process (GO:0042744)lipoxygenase pathway (GO:0019372)mitochondrial matrix (GO:0005759)mitochondrion (GO:0005739)mitochondrion (GO:0005739)mitochondrion (GO:0005739)mitochondrion (GO:0005739)negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (GO:1902042)negative regulation of release of cytochrome c from mitochondria (GO:0090201)peroxidase activity (GO:0004601)phospholipid-hydroperoxide glutathione peroxidase activity (GO:0047066)phospholipid-hydroperoxide glutathione peroxidase activity (GO:0047066)positive regulation of supramolecular fiber organization (GO:1902905)protein binding (GO:0005515)protein tyrosine kinase binding (GO:1990782)regulation of mammary gland epithelial cell proliferation (GO:0033599)regulation of proteasomal protein catabolic process (GO:0061136)response to estradiol (GO:0032355)response to folic acid (GO:0051593)response to glucose (GO:0009749)response to hormone (GO:0009725)response to hydrogen peroxide (GO:0042542)response to hydrogen peroxide (GO:0042542)response to nicotine (GO:0035094)response to oxidative stress (GO:0006979)response to selenium ion (GO:0010269)response to selenium ion (GO:0010269)response to selenium ion (GO:0010269)response to vitamin E (GO:0033197)
Expression (TPM)
GPX1 — as a Regulated Gene

TFs regulating GPX1 0 TFs

Transcription factors with Perturb-seq knockdown data for GPX1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = GPX1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to GPX1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of GPX1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr3:49,093,005–49,094,956 264.1 kb Distal (>10kb) Multiome 944
chr3:49,104,279–49,105,309 253.6 kb Distal (>10kb) Multiome 712
chr3:49,120,575–49,121,282 237.5 kb Distal (>10kb) Multiome 765
chr3:49,132,603–49,133,965 224.7 kb Distal (>10kb) Multiome 652
chr3:49,166,057–49,166,586 192.0 kb Distal (>10kb) Multiome 622
chr3:49,170,896–49,171,950 187.0 kb Distal (>10kb) Multiome 781
chr3:49,276,912–49,277,398 81.3 kb Distal (>10kb) Multiome 291
chr3:49,339,607–49,340,853 18.2 kb Distal (>10kb) Multiome 1044
chr3:49,357,868–49,359,083 71 bp At TSS Multiome 908
chr3:49,411,409–49,412,844 53.8 kb Distal (>10kb) Multiome 899
chr3:49,422,179–49,422,905 64.2 kb Distal (>10kb) Multiome 453
chr3:49,428,857–49,429,869 71.1 kb Distal (>10kb) Multiome 712
chr3:49,461,484–49,462,134 103.4 kb Distal (>10kb) Multiome 207
chr3:49,468,926–49,470,930 111.8 kb Distal (>10kb) Multiome 919
chr3:49,539,369–49,540,584 181.6 kb Distal (>10kb) Multiome 628
chr3:49,553,618–49,555,244 196.1 kb Distal (>10kb) Multiome 710

Genome Browser

Genomic view of the GPX1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr3:49,083,005 – 49,565,244
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq