The protein encoded by this gene is a member of the fibroblast growth factor receptor family, where amino acid sequence is highly conserved between members and throughout evolution. FGFR family members differ from one another in their ligand affinities and tissue distribution. A full-length representative protein consists of an extracellular region, composed of three immunoglobulin-like domains, a single hydrophobic membrane-spanning segment and a cytoplasmic tyrosine kinase domain. The extracellular portion of the protein interacts with fibroblast growth factors, setting in motion a cascade of downstream signals, ultimately influencing mitogenesis and differentiation. This particular family member is a high-affinity receptor for acidic, basic and/or keratinocyte growth factor, depending on the isoform. Mutations in this gene are associated with Crouzon syndrome, Pfeiffer syndrome, Craniosynostosis, Apert syndrome, Jackson-Weiss syndrome, Beare-Stevenson cutis gyrata syndrome, Saethre-Chotzen syndrome, and syndromic craniosynostosis. Multiple alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Jan 2009]
Transcription factors with Perturb-seq knockdown data for FGFR2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FGFR2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FGFR2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr10:120,948,941–120,949,508 | 649.4 kb | Distal (>10kb) Multiome HiCAR | 424 | |
| chr10:121,436,522–121,437,172 | 161.6 kb | Distal (>10kb) Multiome | 135 | |
| chr10:121,449,718–121,450,841 | 148.0 kb | Distal (>10kb) Multiome HiCAR | 101 | |
| chr10:121,455,213–121,455,921 | 142.8 kb | Distal (>10kb) Multiome HiCAR | 125 | |
| chr10:121,527,705–121,527,972 | 1.5 kb | Proximal (<10kb) | 150 | |
| chr10:121,580,093–121,581,253 | 18.0 kb | Distal (>10kb) Multiome | 268 | |
| chr10:121,590,171–121,590,475 | 6.1 kb | Proximal (<10kb) | 72 | |
| chr10:121,595,784–121,599,149 | 2.2 kb | Proximal (<10kb) Multiome | 673 | |
| chr10:121,600,562–121,601,013 | 4.0 kb | Proximal (<10kb) | 43 | |
| chr10:121,608,501–121,609,138 | 10.4 kb | Distal (>10kb) Multiome | 474 | |
| chr10:121,891,008–121,891,561 | 292.9 kb | Distal (>10kb) Multiome | 140 |
Genomic view of the FGFR2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.