FGFR2
fibroblast growth factor receptor 2 | CD332, CEK3, ECT1, K-SAM, TK14, TK25, BEK, CFD1, JWS, KGFR

The protein encoded by this gene is a member of the fibroblast growth factor receptor family, where amino acid sequence is highly conserved between members and throughout evolution. FGFR family members differ from one another in their ligand affinities and tissue distribution. A full-length representative protein consists of an extracellular region, composed of three immunoglobulin-like domains, a single hydrophobic membrane-spanning segment and a cytoplasmic tyrosine kinase domain. The extracellular portion of the protein interacts with fibroblast growth factors, setting in motion a cascade of downstream signals, ultimately influencing mitogenesis and differentiation. This particular family member is a high-affinity receptor for acidic, basic and/or keratinocyte growth factor, depending on the isoform. Mutations in this gene are associated with Crouzon syndrome, Pfeiffer syndrome, Craniosynostosis, Apert syndrome, Jackson-Weiss syndrome, Beare-Stevenson cutis gyrata syndrome, Saethre-Chotzen syndrome, and syndromic craniosynostosis. Multiple alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Jan 2009]

Member of: DE-3 Developmental clusters: GC6
Biological processes 148 terms
ATP binding (GO:0005524)Golgi apparatus (GO:0005794)angiogenesis (GO:0001525)angiogenesis (GO:0001525)animal organ morphogenesis (GO:0009887)axonogenesis (GO:0007409)bone development (GO:0060348)bone mineralization (GO:0030282)bone morphogenesis (GO:0060349)branch elongation involved in salivary gland morphogenesis (GO:0060667)branching involved in labyrinthine layer morphogenesis (GO:0060670)branching involved in prostate gland morphogenesis (GO:0060442)branching involved in salivary gland morphogenesis (GO:0060445)branching morphogenesis of a nerve (GO:0048755)bud elongation involved in lung branching (GO:0060449)cell cortex (GO:0005938)cell fate commitment (GO:0045165)cell surface (GO:0009986)cell surface (GO:0009986)cell surface (GO:0009986)cell-cell signaling (GO:0007267)cellular response to fibroblast growth factor stimulus (GO:0044344)cellular response to hypoxia (GO:0071456)cellular response to retinoic acid (GO:0071300)cellular response to transforming growth factor beta stimulus (GO:0071560)chordate embryonic development (GO:0043009)cranial skeletal system development (GO:1904888)cytoplasm (GO:0005737)cytoplasmic vesicle (GO:0031410)digestive tract development (GO:0048565)embryonic cranial skeleton morphogenesis (GO:0048701)embryonic digestive tract morphogenesis (GO:0048557)embryonic organ development (GO:0048568)embryonic organ morphogenesis (GO:0048562)embryonic organ morphogenesis (GO:0048562)embryonic pattern specification (GO:0009880)endochondral bone growth (GO:0003416)epidermis morphogenesis (GO:0048730)epithelial cell differentiation (GO:0030855)epithelial cell proliferation involved in salivary gland morphogenesis (GO:0060664)epithelial to mesenchymal transition (GO:0001837)excitatory synapse (GO:0060076)extracellular region (GO:0005576)fibroblast growth factor binding (GO:0017134)fibroblast growth factor binding (GO:0017134)fibroblast growth factor binding (GO:0017134)fibroblast growth factor binding (GO:0017134)fibroblast growth factor receptor activity (GO:0005007)fibroblast growth factor receptor activity (GO:0005007)fibroblast growth factor receptor activity (GO:0005007)fibroblast growth factor receptor activity (GO:0005007)fibroblast growth factor receptor activity (GO:0005007)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway involved in hemopoiesis (GO:0035603)fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow cell (GO:0035602)fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development (GO:0035607)fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow (GO:0035604)gland morphogenesis (GO:0022612)hair follicle morphogenesis (GO:0031069)identical protein binding (GO:0042802)in utero embryonic development (GO:0001701)inner ear morphogenesis (GO:0042472)lacrimal gland development (GO:0032808)lateral sprouting from an epithelium (GO:0060601)limb bud formation (GO:0060174)lung alveolus development (GO:0048286)lung development (GO:0030324)lung lobe morphogenesis (GO:0060463)lung-associated mesenchyme development (GO:0060484)mammary gland bud formation (GO:0060615)membrane (GO:0016020)membrane (GO:0016020)membranous septum morphogenesis (GO:0003149)mesenchymal cell differentiation (GO:0048762)mesenchymal cell differentiation involved in lung development (GO:0060915)mesenchymal cell proliferation involved in lung development (GO:0060916)mesodermal cell differentiation (GO:0048333)midbrain development (GO:0030901)morphogenesis of embryonic epithelium (GO:0016331)negative regulation of cell population proliferation (GO:0008285)negative regulation of epithelial cell proliferation (GO:0050680)negative regulation of keratinocyte proliferation (GO:0010839)negative regulation of transcription by RNA polymerase II (GO:0000122)nucleus (GO:0005634)odontogenesis (GO:0042476)orbitofrontal cortex development (GO:0021769)organ growth (GO:0035265)otic vesicle formation (GO:0030916)outflow tract septum morphogenesis (GO:0003148)peptidyl-tyrosine phosphorylation (GO:0018108)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)positive regulation of ERK1 and ERK2 cascade (GO:0070374)positive regulation of MAPK cascade (GO:0043410)positive regulation of MAPK cascade (GO:0043410)positive regulation of MAPK cascade (GO:0043410)positive regulation of Wnt signaling pathway (GO:0030177)positive regulation of canonical Wnt signaling pathway (GO:0090263)positive regulation of cardiac muscle cell proliferation (GO:0060045)positive regulation of cell cycle (GO:0045787)positive regulation of cell division (GO:0051781)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of epithelial cell proliferation (GO:0050679)positive regulation of epithelial cell proliferation involved in lung morphogenesis (GO:0060501)positive regulation of mesenchymal cell proliferation (GO:0002053)positive regulation of phospholipase activity (GO:0010518)positive regulation of transcription by RNA polymerase II (GO:0045944)positive regulation of vascular associated smooth muscle cell proliferation (GO:1904707)post-embryonic development (GO:0009791)prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis (GO:0060527)prostate epithelial cord elongation (GO:0060523)prostate gland morphogenesis (GO:0060512)protein autophosphorylation (GO:0046777)protein binding (GO:0005515)protein homodimerization activity (GO:0042803)protein kinase activity (GO:0004672)protein tyrosine kinase activity (GO:0004713)protein tyrosine kinase activity (GO:0004713)pyramidal neuron development (GO:0021860)regulation of ERK1 and ERK2 cascade (GO:0070372)regulation of cell differentiation (GO:0045595)regulation of epithelial cell proliferation (GO:0050678)regulation of morphogenesis of a branching structure (GO:0060688)regulation of osteoblast differentiation (GO:0045667)regulation of osteoblast proliferation (GO:0033688)regulation of smooth muscle cell differentiation (GO:0051150)regulation of smoothened signaling pathway (GO:0008589)reproductive structure development (GO:0048608)response to ethanol (GO:0045471)response to lipopolysaccharide (GO:0032496)signaling receptor complex (GO:0043235)skeletal system morphogenesis (GO:0048705)skeletal system morphogenesis (GO:0048705)squamous basal epithelial stem cell differentiation involved in prostate gland acinus development (GO:0060529)transmembrane receptor protein tyrosine kinase activity (GO:0004714)ureteric bud development (GO:0001657)ventricular cardiac muscle tissue morphogenesis (GO:0055010)ventricular zone neuroblast division (GO:0021847)
Expression (TPM)
FGFR2 — as a Regulated Gene

TFs regulating FGFR2 0 TFs

Transcription factors with Perturb-seq knockdown data for FGFR2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FGFR2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to FGFR2

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FGFR2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr10:120,948,941–120,949,508 649.4 kb Distal (>10kb) Multiome HiCAR 424
chr10:121,436,522–121,437,172 161.6 kb Distal (>10kb) Multiome 135
chr10:121,449,718–121,450,841 148.0 kb Distal (>10kb) Multiome HiCAR 101
chr10:121,455,213–121,455,921 142.8 kb Distal (>10kb) Multiome HiCAR 125
chr10:121,527,705–121,527,972 1.5 kb Proximal (<10kb) 150
chr10:121,580,093–121,581,253 18.0 kb Distal (>10kb) Multiome 268
chr10:121,590,171–121,590,475 6.1 kb Proximal (<10kb) 72
chr10:121,595,784–121,599,149 2.2 kb Proximal (<10kb) Multiome 673
chr10:121,600,562–121,601,013 4.0 kb Proximal (<10kb) 43
chr10:121,608,501–121,609,138 10.4 kb Distal (>10kb) Multiome 474
chr10:121,891,008–121,891,561 292.9 kb Distal (>10kb) Multiome 140

Genome Browser

Genomic view of the FGFR2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr10:120,938,941 – 121,901,561
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq