This gene encodes a protein of unknown function. The protein is weakly similar to transposase-like proteins in human and mouse. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for FAM200A. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FAM200A upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FAM200A, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:99,325,304–99,326,401 | 226.2 kb | Distal (>10kb) Multiome | 858 | |
| chr7:99,373,955–99,375,619 | 176.6 kb | Distal (>10kb) Multiome | 759 | |
| chr7:99,392,361–99,394,025 | 158.9 kb | Distal (>10kb) Multiome | 486 | |
| chr7:99,407,975–99,409,432 | 143.3 kb | Distal (>10kb) Multiome | 975 | |
| chr7:99,438,371–99,439,668 | 113.0 kb | Distal (>10kb) Multiome | 881 | |
| chr7:99,465,842–99,466,381 | 86.0 kb | Distal (>10kb) Multiome | 949 | |
| chr7:99,471,690–99,473,325 | 79.3 kb | Distal (>10kb) Multiome | 861 | |
| chr7:99,499,759–99,500,629 | 51.8 kb | Distal (>10kb) Multiome | 809 | |
| chr7:99,504,224–99,505,507 | 47.3 kb | Distal (>10kb) Multiome | 881 | |
| chr7:99,551,826–99,552,261 | at TSS | At TSS | 766 | |
| chr7:99,557,927–99,559,319 | 6.5 kb | Proximal (<10kb) Multiome | 922 | |
| chr7:99,580,108–99,580,792 | 28.3 kb | Distal (>10kb) Multiome | 296 | |
| chr7:99,616,474–99,617,353 | 64.7 kb | Distal (>10kb) Multiome | 1043 | |
| chr7:99,693,257–99,693,867 | 141.4 kb | Distal (>10kb) Multiome | 518 | |
| chr7:99,839,578–99,840,069 | 287.7 kb | Distal (>10kb) Multiome | 85 |
Genomic view of the FAM200A locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.