Transcription factors with Perturb-seq knockdown data for ENSG00000279827. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000279827 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000279827, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:8,444,605–8,445,806 | at TSS | At TSS | 910 | |
| chr19:8,448,925–8,449,257 | 3.3 kb | Proximal (<10kb) | 36 | |
| chr19:8,451,492–8,451,842 | 5.9 kb | Proximal (<10kb) | 76 | |
| chr19:8,451,950–8,452,159 | 6.4 kb | Proximal (<10kb) | 132 | |
| chr19:8,452,486–8,452,785 | 6.9 kb | Proximal (<10kb) | 34 |
Genomic view of the ENSG00000279827 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.