Predicted to be active in endoplasmic reticulum. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for CNPY2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CNPY2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CNPY2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr12:56,020,644–56,021,511 | 295.1 kb | Distal (>10kb) Multiome | 364 | |
| chr12:56,041,220–56,042,537 | 274.3 kb | Distal (>10kb) Multiome | 1035 | |
| chr12:56,078,964–56,081,015 | 236.9 kb | Distal (>10kb) Multiome | 1032 | |
| chr12:56,103,918–56,105,302 | 211.7 kb | Distal (>10kb) Multiome | 977 | |
| chr12:56,115,844–56,117,060 | 199.6 kb | Distal (>10kb) Multiome | 958 | |
| chr12:56,117,641–56,119,301 | 197.9 kb | Distal (>10kb) Multiome | 1052 | |
| chr12:56,126,181–56,126,640 | 189.8 kb | Distal (>10kb) Multiome | 671 | |
| chr12:56,127,552–56,129,104 | 188.0 kb | Distal (>10kb) Multiome | 800 | |
| chr12:56,151,724–56,153,003 | 163.6 kb | Distal (>10kb) Multiome | 830 | |
| chr12:56,157,307–56,159,499 | 157.9 kb | Distal (>10kb) Multiome | 1008 | |
| chr12:56,188,836–56,190,865 | 126.5 kb | Distal (>10kb) Multiome | 954 | |
| chr12:56,221,094–56,222,691 | 94.2 kb | Distal (>10kb) Multiome | 884 | |
| chr12:56,222,996–56,223,487 | 93.0 kb | Distal (>10kb) Multiome | 38 | |
| chr12:56,223,843–56,224,800 | 91.8 kb | Distal (>10kb) Multiome | 765 | |
| chr12:56,257,471–56,258,774 | 57.7 kb | Distal (>10kb) Multiome | 710 | |
| chr12:56,266,608–56,267,683 | 49.1 kb | Distal (>10kb) Multiome | 857 | |
| chr12:56,299,744–56,300,865 | 15.7 kb | Distal (>10kb) Multiome HiCAR | 923 | |
| chr12:56,315,380–56,316,674 | 56 bp | At TSS Multiome | 934 | |
| chr12:56,333,366–56,334,588 | 17.9 kb | Distal (>10kb) Multiome HiCAR | 853 | |
| chr12:56,359,808–56,360,881 | 44.2 kb | Distal (>10kb) Multiome | 860 | |
| chr12:56,448,848–56,449,756 | 133.1 kb | Distal (>10kb) Multiome | 920 | |
| chr12:56,468,239–56,468,840 | 152.4 kb | Distal (>10kb) Multiome HiCAR | 907 | |
| chr12:56,487,633–56,488,590 | 172.2 kb | Distal (>10kb) Multiome | 784 |
Genomic view of the CNPY2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.