CCNE1
cyclin E1 | CCNE

The protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of CDK kinases. Different cyclins exhibit distinct expression and degradation patterns which contribute to the temporal coordination of each mitotic event. This cyclin forms a complex with and functions as a regulatory subunit of CDK2, whose activity is required for cell cycle G1/S transition. This protein accumulates at the G1-S phase boundary and is degraded as cells progress through S phase. Overexpression of this gene has been observed in many tumors, which results in chromosome instability, and thus may contribute to tumorigenesis. This protein was found to associate with, and be involved in, the phosphorylation of NPAT protein (nuclear protein mapped to the ATM locus), which participates in cell-cycle regulated histone gene expression and plays a critical role in promoting cell-cycle progression in the absence of pRB. [provided by RefSeq, Apr 2016]

Member of: DE-6 DE-6.1 Developmental clusters: GC4
Biological processes 22 terms
Expression (TPM)
CCNE1 — as a Regulated Gene

TFs regulating CCNE1 0 TFs

Transcription factors with Perturb-seq knockdown data for CCNE1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CCNE1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to CCNE1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CCNE1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr19:29,528,180–29,529,621 283.4 kb Distal (>10kb) Multiome 401
chr19:29,529,766–29,530,718 281.7 kb Distal (>10kb) Multiome 175
chr19:29,605,720–29,606,615 205.8 kb Distal (>10kb) Multiome 901
chr19:29,610,433–29,610,904 201.3 kb Distal (>10kb) Multiome 320
chr19:29,665,021–29,667,200 146.6 kb Distal (>10kb) Multiome 621
chr19:29,714,800–29,715,683 96.7 kb Distal (>10kb) Multiome 726
chr19:29,724,045–29,724,626 87.6 kb Distal (>10kb) Multiome 189
chr19:29,759,946–29,760,434 51.7 kb Distal (>10kb) Multiome 502
chr19:29,811,175–29,812,847 184 bp At TSS Multiome 705
chr19:29,843,949–29,845,909 32.9 kb Distal (>10kb) Multiome 804
chr19:29,872,251–29,872,744 60.4 kb Distal (>10kb) Multiome 90
chr19:29,872,961–29,874,087 61.6 kb Distal (>10kb) Multiome 469
chr19:29,941,860–29,942,984 130.3 kb Distal (>10kb) Multiome 766

Genome Browser

Genomic view of the CCNE1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr19:29,518,180 – 29,952,984
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq