Transcription factors with Perturb-seq knockdown data for C6orf62. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = C6orf62 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of C6orf62, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr6:24,494,447–24,495,849 | 225.7 kb | Distal (>10kb) Multiome | 946 | |
| chr6:24,630,916–24,631,933 | 89.4 kb | Distal (>10kb) Multiome | 80 | |
| chr6:24,645,624–24,646,552 | 74.7 kb | Distal (>10kb) Multiome | 641 | |
| chr6:24,666,308–24,667,466 | 53.9 kb | Distal (>10kb) Multiome | 1037 | |
| chr6:24,719,378–24,722,053 | 391 bp | At TSS Multiome | 1238 | |
| chr6:24,774,256–24,775,895 | 54.3 kb | Distal (>10kb) Multiome | 1073 | |
| chr6:24,910,313–24,911,578 | 190.3 kb | Distal (>10kb) Multiome | 372 | |
| chr6:24,980,508–24,981,759 | 260.4 kb | Distal (>10kb) Multiome | 163 |
Genomic view of the C6orf62 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.