BRWD1
bromodomain and WD repeat domain containing 1 | DCAF19, FLJ11315, N143, C21orf107, WDR9

This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD) residues which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes including cell cycle progression, signal transduction, apoptosis, and gene regulation. This protein contains 2 bromodomains and multiple WD repeats. This gene is located within the Down syndrome region-2 on chromosome 21. Alternative splicing of this gene generates multiple transcript variants encoding distinct isoforms. In mouse, this gene encodes a nuclear protein that has a polyglutamine-containing region that functions as a transcriptional activation domain which may regulate chromatin remodelling and associates with a component of the SWI/SNF chromatin remodelling complex.[provided by RefSeq, Jun 2011]

Member of: DE-2 DE-2.34
Biological processes 17 terms
Expression (TPM)
BRWD1 — as a Regulated Gene

TFs regulating BRWD1 0 TFs

Transcription factors with Perturb-seq knockdown data for BRWD1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = BRWD1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to BRWD1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of BRWD1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr21:38,945,569–38,946,100 272.8 kb Distal (>10kb) Multiome 116
chr21:38,979,289–38,980,192 239.0 kb Distal (>10kb) Multiome 172
chr21:38,995,212–38,995,827 223.1 kb Distal (>10kb) Multiome 25
chr21:39,182,840–39,184,214 35.0 kb Distal (>10kb) Multiome 1028
chr21:39,312,364–39,314,680 95.2 kb Distal (>10kb) Multiome 1121
chr21:39,332,179–39,332,739 113.7 kb Distal (>10kb) Multiome 188
chr21:39,348,209–39,350,114 130.6 kb Distal (>10kb) Multiome 923
chr21:39,380,111–39,380,888 161.7 kb Distal (>10kb) Multiome 663
chr21:39,387,404–39,389,039 170.2 kb Distal (>10kb) Multiome 713
chr21:39,429,900–39,431,278 212.0 kb Distal (>10kb) Multiome 277
chr21:39,445,343–39,446,179 227.1 kb Distal (>10kb) Multiome 837
chr21:39,451,559–39,452,036 233.1 kb Distal (>10kb) Multiome 267

Genome Browser

Genomic view of the BRWD1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr21:38,935,569 – 39,462,036
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq